mutLBSgeneDB |
Gene summary for WIF1 |
Gene summary |
Basic gene Info. | Gene symbol | WIF1 |
Gene name | WNT inhibitory factor 1 | |
Synonyms | WIF-1 | |
Cytomap | UCSC genome browser: 12q14.3 | |
Type of gene | protein-coding | |
RefGenes | NM_007191.4, | |
Description | wnt inhibitory factor 1 | |
Modification date | 20141207 | |
dbXrefs | MIM : 605186 | |
HGNC : HGNC | ||
Ensembl : ENSG00000156076 | ||
HPRD : 05541 | ||
Vega : OTTHUMG00000168832 | ||
Protein | UniProt: Q9Y5W5 go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_WIF1 | |
BioGPS: 11197 | ||
Pathway | NCI Pathway Interaction Database: WIF1 | |
KEGG: WIF1 | ||
REACTOME: WIF1 | ||
Pathway Commons: WIF1 | ||
Context | iHOP: WIF1 | |
ligand binding site mutation search in PubMed: WIF1 | ||
UCL Cancer Institute: WIF1 | ||
Assigned class in mutLBSgeneDB | C: This gene just belongs to mutLBSgenes. |
Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
GO ID | GO Term | PubMed ID |
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Ligand binding site mutations for WIF1 |
Lollipop-style diagram of mutations at LBS in amino-acid sequence. We represented ligand binding site mutations only. (You can see big image via clicking.) : non-synonymous mutation on LBS, Circle size denotes number of samples. |
Cancer type specific mutLBS sorted by frequency |
LBS | AAchange of nsSNV | Cancer type | # samples | I231 | I231M | BRCA | 1 | C182 | P183T | KIRC | 1 | C182 | P183T | LUSC | 1 | C186 | R187Q | UCEC | 1 |
cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
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Protein structure related information for WIF1 |
Relative protein structure stability change (ΔΔE) using Mupro 1.1 Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
: nsSNV at non-LBS: nsSNV at LBS |
nsSNVs sorted by the relative stability change of protein structure by each mutation Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
LBS | AAchange of nsSNV | Relative stability change | I231 | I231M | -0.94232741 | C186 | R187Q | -0.81576844 | C182 | P183T | -0.73740645 |
(MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
Structure image for WIF1 from PDB |
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Differential gene expression and gene-gene network for WIF1 |
Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types |
Differential co-expressed gene network based on protein-protein interaction data (CePIN) |
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Phenotype information for WIF1 |
Gene level disease information (DisGeNet) |
Disease ID | Disease name | # PubMed | Association type |
umls:C0009404 | Colorectal Neoplasms | 2 | Biomarker |
umls:C0014859 | Esophageal Neoplasms | 1 | Biomarker |
umls:C0027439 | Nasopharyngeal Neoplasms | 1 | Biomarker |
umls:C0038356 | Stomach Neoplasms | 1 | Biomarker |
Mutation level pathogenic information (ClinVar annotation) |
Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
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Pharmacological information for WIF1 |
Gene expression profile of anticancer drug treated cell-lines (CCLE) Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient. |
Drug information targeting mutLBSgene (Approved drugs only) |
Drug status | DrugBank ID | Name | Type | Drug structure |
Gene-centered ligand-gene interaction network |
Ligands binding to mutated ligand binding site of WIF1 go to BioLip |
Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | CA | CALCIUM(2+) | 2ygp | A | C182 C186 |
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Conservation information for LBS of WIF1 |
Multiple alignments for Q9Y5W5 in multiple species |
LBS | AA sequence | # species | Species | C182 | ---AECPGGCR | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | C182 | TTLQECSLKCG | 1 | Drosophila melanogaster | C182 | ---AKCPGGCR | 1 | Danio rerio | C186 | ECPGGCRNGGF | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | C186 | ECSLKCGKNGY | 1 | Drosophila melanogaster | C186 | KCPGGCRNGGY | 1 | Danio rerio | C192 | RNGGFCNERRV | 2 | Mus musculus, Rattus norvegicus | C192 | RNGGFCNERRI | 1 | Homo sapiens | C192 | GKNGYCNEHHI | 1 | Drosophila melanogaster | C192 | RNGGYCNERQV | 1 | Danio rerio | G185 | AECPGGCRNGG | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | G185 | QECSLKCGKNG | 1 | Drosophila melanogaster | G185 | AKCPGGCRNGG | 1 | Danio rerio | G253 | TTCFNGGTCFY | 2 | Homo sapiens, Mus musculus | G253 | DKCLNGGKCIQ | 1 | Drosophila melanogaster | G253 | TTCLNGGTCFH | 1 | Danio rerio | G253 | ATCFNGGTCFY | 1 | Rattus norvegicus | I231 | TPGFCICPPGF | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | I231 | APSVCTCPEGY | 1 | Drosophila melanogaster | I231 | SPGVCICPPGY | 1 | Danio rerio | T255 | CFNGGTCFYPG | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | T255 | CLNGGKCIQKD | 1 | Drosophila melanogaster | T255 | CLNGGTCFHPG | 1 | Danio rerio |
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