mutLBSgeneDB

mutLBSgeneDB
mutated Ligand Binding Site gene DataBase

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Gene Summary

Ligand Binding Site Mutation Information

Protein Structure Related Information

Gene Expression and Gene-Gene Network

Phenotype Information

Pharmacological Information

Conservation Information for LBS

Gene summary for FCN2
Gene summary
Basic gene Info.Gene symbolFCN2
Gene nameficolin (collagen/fibrinogen domain containing lectin) 2
SynonymsEBP-37|FCNL|P35|ficolin-2
CytomapUCSC genome browser: 9q34.3
Type of geneprotein-coding
RefGenesNM_004108.2,
NM_015837.2,NM_015838.1,NM_015839.1,
Description37 kDa elastin-binding proteinL-ficolincollagen/fibrinogen domain-containing protein 2ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)ficolin Bficolin-2ficolin-Bficolin-betaserum lectin p35
Modification date20141207
dbXrefs MIM : 601624
HGNC : HGNC
Ensembl : ENSG00000160339
HPRD : 03376
Vega : OTTHUMG00000020892
ProteinUniProt: Q15485
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_FCN2
BioGPS: 2220
PathwayNCI Pathway Interaction Database: FCN2
KEGG: FCN2
REACTOME: FCN2
Pathway Commons: FCN2
ContextiHOP: FCN2
ligand binding site mutation search in PubMed: FCN2
UCL Cancer Institute: FCN2
Assigned class in mutLBSgeneDBC: This gene just belongs to mutLBSgenes.

Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO TermPubMed ID


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Ligand binding site mutations for FCN2
Lollipop-style diagram of mutations at LBS in amino-acid sequence.
We represented ligand binding site mutations only. (You can see big image via clicking.)
 
: non-synonymous mutation on LBS, Circle size denotes number of samples.

Cancer type specific mutLBS sorted by frequency
LBSAAchange of nsSNVCancer type# samples
G139G139RSKCM2
D194D194YCOAD1
F261M260TCOAD1
R147Q146HLUAD1
D194R192LLUAD1
F287A288GLUAD1
E215E217KSKCM1
F287G285SSKCM1
N256C257FSTAD1
E215A216VSTAD1
L132T130NUCEC1
cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma.


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Protein structure related information for FCN2
Relative protein structure stability change (ΔΔE) using Mupro 1.1
Mupro score denotes assessment of the effect of mutations on thermodynamic stability.
  (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability)
: nsSNV at non-LBS: nsSNV at LBS

nsSNVs sorted by the relative stability change of protein structure by each mutation
Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene.
LBSAAchange of nsSNVRelative stability change
F287A288G-1.6030686
E215E217K-1.1269433
D194D194Y-0.90246231
L132T130N-0.87304099
R147Q146H-0.79335223
G139G139R-0.79100796
F261M260T-0.7336814
E215A216V-0.5770472
F287G285S-0.5623178
D194R192L-0.29555225
N256C257F-0.25918426
(MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132)

Structure image for FCN2 from PDB
PDB IDPDB titlePDB structure
2J3GL-FICOLIN

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Differential gene expression and gene-gene network for FCN2
Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types

Differential co-expressed gene network based on protein-protein interaction data (CePIN)
* Left PPI network was created from samples with mutations in the LBS of FCN2 and the right PPI network was created from samples without mutations in the LBS of FCN2. Only genes with p-value < 0.05 are shown.
Red circle: input gene. Orange circle: LBSgene. Blue circle: other gene.


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Phenotype information for FCN2
Gene level disease information (DisGeNet)
Disease IDDisease name# PubMedAssociation type

Mutation level pathogenic information (ClinVar annotation)
Allele IDAA changeClinical significanceOriginPhenotype IDs

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Pharmacological information for FCN2
Gene expression profile of anticancer drug treated cell-lines (CCLE)
Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient.
Drug information targeting mutLBSgene (Approved drugs only)
Drug statusDrugBank IDNameTypeDrug structure

Gene-centered ligand-gene interaction network

Ligands binding to mutated ligand binding site of FCN2 go to BioLip
Ligand IDLigand short nameLigand long namePDB IDPDB namemutLBS


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Conservation information for LBS of FCN2
Multiple alignments for Q15485 in multiple species
LBSAA sequence# speciesSpecies


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