mutLBSgeneDB |
Gene summary for BRD1 |
Gene summary |
Basic gene Info. | Gene symbol | BRD1 |
Gene name | bromodomain containing 1 | |
Synonyms | BRL|BRPF1|BRPF2 | |
Cytomap | UCSC genome browser: 22q13.33 | |
Type of gene | protein-coding | |
RefGenes | NM_014577.1, | |
Description | BR140-like proteinbromodomain and PHD finger-containing protein 2bromodomain-containing protein 1 | |
Modification date | 20141215 | |
dbXrefs | MIM : 604589 | |
HGNC : HGNC | ||
Ensembl : ENSG00000100425 | ||
HPRD : 06848 | ||
Vega : OTTHUMG00000150288 | ||
Protein | UniProt: O95696 go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_BRD1 | |
BioGPS: 23774 | ||
Pathway | NCI Pathway Interaction Database: BRD1 | |
KEGG: BRD1 | ||
REACTOME: BRD1 | ||
Pathway Commons: BRD1 | ||
Context | iHOP: BRD1 | |
ligand binding site mutation search in PubMed: BRD1 | ||
UCL Cancer Institute: BRD1 | ||
Assigned class in mutLBSgeneDB | B: This gene belongs to targetable_mutLBSgenes. |
Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
GO ID | GO Term | PubMed ID | GO:0043966 | histone H3 acetylation | 16387653 |
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Ligand binding site mutations for BRD1 |
Lollipop-style diagram of mutations at LBS in amino-acid sequence. We represented ligand binding site mutations only. (You can see big image via clicking.) : non-synonymous mutation on LBS, Circle size denotes number of samples. |
Cancer type specific mutLBS sorted by frequency |
LBS | AAchange of nsSNV | Cancer type | # samples | C385 | C385Y | BLCA | 1 | S997 | R996S | COAD | 1 | H388 | T389M | HNSC | 1 | C258 | R259C | STAD | 1 | Y940 | Y940C | STAD | 1 | F648 | V647M | STAD | 1 | C258 | R259H | STAD | 1 | C385 | A383T | UCEC | 1 | Y943 | P944Q | UCEC | 1 | C638 | C638Y | UCEC | 1 | Y599 | D598Y | UCEC | 1 | F648 | V647M | UCEC | 1 |
cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
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Protein structure related information for BRD1 |
Relative protein structure stability change (ΔΔE) using Mupro 1.1 Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
: nsSNV at non-LBS: nsSNV at LBS |
nsSNVs sorted by the relative stability change of protein structure by each mutation Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
LBS | AAchange of nsSNV | Relative stability change | C385 | A383T | -1.3158874 | C258 | R259H | -1.2038794 | C638 | C638Y | -1.1932111 | Y940 | Y940C | -1.1568137 | S997 | R996S | -1.1267772 | C258 | R259C | -0.95172878 | Y943 | P944Q | -0.71853522 | C385 | C385Y | -0.68796915 | F648 | V647M | -0.67221786 | Y599 | D598Y | -0.38647451 | H388 | T389M | -0.30594802 |
(MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
Structure image for BRD1 from PDB |
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Differential gene expression and gene-gene network for BRD1 |
Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types |
Differential co-expressed gene network based on protein-protein interaction data (CePIN) |
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Phenotype information for BRD1 |
Gene level disease information (DisGeNet) |
Disease ID | Disease name | # PubMed | Association type |
umls:C0010606 | Carcinoma, Adenoid Cystic | 1 | Biomarker |
Mutation level pathogenic information (ClinVar annotation) |
Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
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Pharmacological information for BRD1 |
Gene expression profile of anticancer drug treated cell-lines (CCLE) Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient. |
Drug information targeting mutLBSgene (Approved drugs only) |
Drug status | DrugBank ID | Name | Type | Drug structure |
Gene-centered ligand-gene interaction network |
Ligands binding to mutated ligand binding site of BRD1 go to BioLip |
Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | ZN | ZINC(2+) | 2lq6 | A | C385 H388 | MB3 | N-METHYLPYRROLIDIN-2-ONE | 3rcw | C | C638 F648 | OCS | L-CYSTEIC ACID | 3lyi | A | S997 | 4K8 | ISOQUINOLINE-3-CARBOXYLIC ACID | 4z02 | A | Y940 Y943 S997 | 4K8 | ISOQUINOLINE-3-CARBOXYLIC ACID | 4z02 | B | Y943 S997 |
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Conservation information for LBS of BRD1 |
Multiple alignments for O95696 in multiple species |
LBS | AA sequence | # species | Species |
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