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mutLBSgeneDB |
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| Gene summary for GALNS |
 Gene summary |
| Basic gene Info. | Gene symbol | GALNS |
| Gene name | galactosamine (N-acetyl)-6-sulfatase | |
| Synonyms | GALNAC6S|GAS|GalN6S|MPS4A | |
| Cytomap | UCSC genome browser: 16q24.3 | |
| Type of gene | protein-coding | |
| RefGenes | NM_000512.4, | |
| Description | N-acetylgalactosamine-6-sulfataseN-acetylgalactosamine-6-sulfate sulfatasechondroitinasechondroitinsulfatasegalNAc6S sulfatasegalactosamine (N-acetyl)-6-sulfate sulfatasegalactose-6-sulfate sulfatase | |
| Modification date | 20141219 | |
| dbXrefs | MIM : 612222 | |
| HGNC : HGNC | ||
| Ensembl : ENSG00000141012 | ||
| HPRD : 08357 | ||
| Vega : OTTHUMG00000137862 | ||
| Protein | UniProt: P34059 go to UniProt's Cross Reference DB Table | |
| Expression | CleanEX: HS_GALNS | |
| BioGPS: 2588 | ||
| Pathway | NCI Pathway Interaction Database: GALNS | |
| KEGG: GALNS | ||
| REACTOME: GALNS | ||
| Pathway Commons: GALNS | ||
| Context | iHOP: GALNS | |
| ligand binding site mutation search in PubMed: GALNS | ||
| UCL Cancer Institute: GALNS | ||
| Assigned class in mutLBSgeneDB | C: This gene just belongs to mutLBSgenes. | |
| Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
| GO ID | GO Term | PubMed ID |
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| Ligand binding site mutations for GALNS |
| Lollipop-style diagram of mutations at LBS in amino-acid sequence. We represented ligand binding site mutations only. (You can see big image via clicking.)  : non-synonymous mutation on LBS, Circle size denotes number of samples. |
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| Cancer type specific mutLBS sorted by frequency |
| LBS | AAchange of nsSNV | Cancer type | # samples | C165 | P163L | LUSC | 1 | H236 | T235M | UCEC | 1 | Y108 | A107S | UCEC | 1 |
| cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
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| Protein structure related information for GALNS |
| Relative protein structure stability change (ΔΔE) using Mupro 1.1 Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
 : nsSNV at non-LBS : nsSNV at LBS |
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| nsSNVs sorted by the relative stability change of protein structure by each mutation Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
| LBS | AAchange of nsSNV | Relative stability change | H236 | T235M | -1.2426615 | Y108 | A107S | -1.2411174 | C165 | P163L | -0.010179753 |
| (MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
| Structure image for GALNS from PDB |
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| Differential gene expression and gene-gene network for GALNS |
| Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types |
| Differential co-expressed gene network based on protein-protein interaction data (CePIN) |
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| Phenotype information for GALNS |
| Gene level disease information (DisGeNet) |
| Disease ID | Disease name | # PubMed | Association type |
| umls:C0086651 | Mucopolysaccharidosis, MPS-IV-A | 34 | Biomarker, GeneticVariation |
| umls:C0026707 | Mucopolysaccharidosis IV | 10 | Biomarker, GeneticVariation |
| umls:C0021368 | Inflammation | 1 | Therapeutic |
| Mutation level pathogenic information (ClinVar annotation) |
| Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
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| Pharmacological information for GALNS |
| Gene expression profile of anticancer drug treated cell-lines (CCLE) Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient. |
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| Drug information targeting mutLBSgene (Approved drugs only) |
| Drug status | DrugBank ID | Name | Type | Drug structure |
| Gene-centered ligand-gene interaction network |
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| Ligands binding to mutated ligand binding site of GALNS go to BioLip |
| Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | NGA | N-ACETYL-D-GALACTOSAMINE | 4fdj | A | Y108 C165 H236 | NGA | N-ACETYL-D-GALACTOSAMINE | 4fdj | B | Y108 C165 H236 |
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| Conservation information for LBS of GALNS |
| Multiple alignments for P34059 in multiple species |
| LBS | AA sequence | # species | Species | C165 | FGSPNCHFGPY | 4 | Homo sapiens, Mus musculus, Rattus norvegicus, Canis lupus familiaris | C79 | SANPLCSPSRA | 4 | Homo sapiens, Mus musculus, Rattus norvegicus, Canis lupus familiaris | D288 | VFFTSDNGAAL | 4 | Homo sapiens, Mus musculus, Rattus norvegicus, Canis lupus familiaris | D39 | LLLLMDDMGWG | 2 | Homo sapiens, Canis lupus familiaris | D39 | VLLLMDDMGWG | 2 | Mus musculus, Rattus norvegicus | D40 | LLLMDDMGWGD | 4 | Homo sapiens, Mus musculus, Rattus norvegicus, Canis lupus familiaris | H142 | IVGKWHLGHRP | 4 | Homo sapiens, Mus musculus, Rattus norvegicus, Canis lupus familiaris | H236 | AIDATHAPVYA | 3 | Mus musculus, Rattus norvegicus, Canis lupus familiaris | H236 | AVDATHAPVYA | 1 | Homo sapiens | K140 | SKIVGKWHLGH | 2 | Homo sapiens, Canis lupus familiaris | K140 | NKIVGKWHLGH | 2 | Mus musculus, Rattus norvegicus | K310 | PFLCGKQTTFE | 4 | Homo sapiens, Mus musculus, Rattus norvegicus, Canis lupus familiaris | N289 | FFTSDNGAALI | 4 | Homo sapiens, Mus musculus, Rattus norvegicus, Canis lupus familiaris | Q311 | FLCGKQTTFEG | 4 | Homo sapiens, Mus musculus, Rattus norvegicus, Canis lupus familiaris | Y108 | HARNAYTPQEI | 4 | Homo sapiens, Mus musculus, Rattus norvegicus, Canis lupus familiaris |
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