mutLBSgeneDB |
Gene summary for NCR3 |
Gene summary |
Basic gene Info. | Gene symbol | NCR3 |
Gene name | natural cytotoxicity triggering receptor 3 | |
Synonyms | 1C7|CD337|LY117|MALS|NKp30 | |
Cytomap | UCSC genome browser: 6p21.3 | |
Type of gene | protein-coding | |
RefGenes | NM_001145466.1, NM_001145467.1,NM_147130.2, | |
Description | NK-p30activating NK-A1 receptoractivating natural killer receptor p30lymphocyte antigen 117natural killer cell p30-related protein | |
Modification date | 20141207 | |
dbXrefs | MIM : 611550 | |
HGNC : HGNC | ||
Ensembl : ENSG00000204475 | ||
HPRD : 11384 | ||
Vega : OTTHUMG00000031123 | ||
Protein | UniProt: O14931 go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_NCR3 | |
BioGPS: 259197 | ||
Pathway | NCI Pathway Interaction Database: NCR3 | |
KEGG: NCR3 | ||
REACTOME: NCR3 | ||
Pathway Commons: NCR3 | ||
Context | iHOP: NCR3 | |
ligand binding site mutation search in PubMed: NCR3 | ||
UCL Cancer Institute: NCR3 | ||
Assigned class in mutLBSgeneDB | C: This gene just belongs to mutLBSgenes. |
Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
GO ID | GO Term | PubMed ID |
Top |
Ligand binding site mutations for NCR3 |
Cancer type specific mutLBS sorted by frequency |
LBS | AAchange of nsSNV | Cancer type | # samples | E65 | V66A | COAD | 1 |
cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
Top |
Protein structure related information for NCR3 |
Relative protein structure stability change (ΔΔE) using Mupro 1.1 Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
: nsSNV at non-LBS: nsSNV at LBS |
nsSNVs sorted by the relative stability change of protein structure by each mutation Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
LBS | AAchange of nsSNV | Relative stability change | E65 | V66A | -1.5653207 |
(MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
Structure image for NCR3 from PDB |
Top |
Differential gene expression and gene-gene network for NCR3 |
Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types |
Differential co-expressed gene network based on protein-protein interaction data (CePIN) |
Top |
Top |
Phenotype information for NCR3 |
Gene level disease information (DisGeNet) |
Disease ID | Disease name | # PubMed | Association type |
umls:C0024530 | Malaria | 3 | Biomarker, GeneticVariation |
Mutation level pathogenic information (ClinVar annotation) |
Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
Top |
Pharmacological information for NCR3 |
Gene expression profile of anticancer drug treated cell-lines (CCLE) Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient. |
Drug information targeting mutLBSgene (Approved drugs only) |
Drug status | DrugBank ID | Name | Type | Drug structure |
Gene-centered ligand-gene interaction network |
Ligands binding to mutated ligand binding site of NCR3 go to BioLip |
Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | CA | CALCIUM(2+) | 3noi | A | E65 |
Top |
Conservation information for LBS of NCR3 |
Multiple alignments for O14931 in multiple species |
LBS | AA sequence | # species | Species | A43 | PCSFNASQGRL | 3 | Homo sapiens, Macaca mulatta, Pan troglodytes | E65 | VVPGKEVRNGT | 1 | Homo sapiens | E65 | VAPGKEVRNGT | 1 | Macaca mulatta | E65 | VVPGKEVRNET | 1 | Pan troglodytes | G118 | LGLGVGTGNGT | 3 | Homo sapiens, Macaca mulatta, Pan troglodytes | K64 | EVVPGKEVRNG | 1 | Homo sapiens | K64 | EVAPGKEVRNG | 1 | Macaca mulatta | K64 | EVVPGKEVRNE | 1 | Pan troglodytes | L115 | VEVLGLGVGTG | 3 | Homo sapiens, Macaca mulatta, Pan troglodytes | Q23 | ALWVSQPPEIR | 3 | Homo sapiens, Macaca mulatta, Pan troglodytes | R47 | NASQGRLAIGS | 3 | Homo sapiens, Macaca mulatta, Pan troglodytes | S22 | CALWVSQPPEI | 3 | Homo sapiens, Macaca mulatta, Pan troglodytes | S44 | CSFNASQGRLA | 3 | Homo sapiens, Macaca mulatta, Pan troglodytes | T119 | GLGVGTGNGTR | 3 | Homo sapiens, Macaca mulatta, Pan troglodytes |
Copyright © 2016-Present - The University of Texas Health Science Center at Houston |