mutLBSgeneDB |
Gene summary for RGMB |
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Basic gene Info. | Gene symbol | RGMB |
Gene name | repulsive guidance molecule family member b | |
Synonyms | DRAGON | |
Cytomap | UCSC genome browser: 5q15 | |
Type of gene | protein-coding | |
RefGenes | NM_173670.2, NM_001012761.2, | |
Description | DRG11-responsive axonal guidance and outgrowth of neuriteRGM domain family member BRGM domain family, member Brepulsive guidance molecule B | |
Modification date | 20141207 | |
dbXrefs | MIM : 612687 | |
HGNC : HGNC | ||
Ensembl : ENSG00000174136 | ||
HPRD : 15243 | ||
Vega : OTTHUMG00000162745 | ||
Protein | UniProt: Q6NW40 go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_RGMB | |
BioGPS: 285704 | ||
Pathway | NCI Pathway Interaction Database: RGMB | |
KEGG: RGMB | ||
REACTOME: RGMB | ||
Pathway Commons: RGMB | ||
Context | iHOP: RGMB | |
ligand binding site mutation search in PubMed: RGMB | ||
UCL Cancer Institute: RGMB | ||
Assigned class in mutLBSgeneDB | C: This gene just belongs to mutLBSgenes. |
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GO ID | GO Term | PubMed ID |
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Ligand binding site mutations for RGMB |
![]() We represented ligand binding site mutations only. (You can see big image via clicking.) ![]() |
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LBS | AAchange of nsSNV | Cancer type | # samples | M301 | V302L | COAD | 1 | M301 | V302M | LUAD | 1 | A300 | R300H | UCEC | 1 | M301 | V302M | UCEC | 1 |
cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
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Protein structure related information for RGMB |
![]() Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
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![]() Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
LBS | AAchange of nsSNV | Relative stability change |
(MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
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Differential gene expression and gene-gene network for RGMB |
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Phenotype information for RGMB |
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Disease ID | Disease name | # PubMed | Association type |
umls:C0003873 | Arthritis, Rheumatoid | 1 | Biomarker |
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Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
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Pharmacological information for RGMB |
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Drug status | DrugBank ID | Name | Type | Drug structure |
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Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | III | Peptide ligand (PRO,SER,TYR,LEU,PHE,CYS,GLY,LEU,PHE,GLY,ASP) | 4bq6 | D | A300 M301 | III | Peptide ligand (PRO,SER,TYR,LEU,PHE,CYS,GLY,LEU,PHE,GLY,ASP) | 4bq6 | F | A300 M301 | III | Peptide ligand (PRO,SER,TYR,LEU,PHE,CYS,GLY,LEU,PHE,GLY,ASP) | 4bq7 | D | A300 M301 | III | Peptide ligand (PRO,SER,TYR,LEU,PHE,CYS,GLY,LEU,PHE,GLY,ASP) | 4bq7 | F | A300 M301 | III | Peptide ligand (SER,TYR,LEU,PHE,CYS,GLY,LEU,PHE,GLY,ASP) | 4bq8 | C | M301 |
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Conservation information for LBS of RGMB |
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LBS | AA sequence | # species | Species |
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