mutLBSgeneDB |
Gene summary for GRK4 |
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Basic gene Info. | Gene symbol | GRK4 |
Gene name | G protein-coupled receptor kinase 4 | |
Synonyms | GPRK2L|GPRK4|GRK4a|IT11 | |
Cytomap | UCSC genome browser: 4p16.3 | |
Type of gene | protein-coding | |
RefGenes | NM_001004056.1, NM_001004057.1,NM_005307.2,NM_182982.2, | |
Description | ITI1 | |
Modification date | 20141207 | |
dbXrefs | MIM : 137026 | |
HGNC : HGNC | ||
Ensembl : ENSG00000125388 | ||
HPRD : 00656 | ||
Vega : OTTHUMG00000159914 | ||
Protein | UniProt: P32298 go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_GRK4 | |
BioGPS: 2868 | ||
Pathway | NCI Pathway Interaction Database: GRK4 | |
KEGG: GRK4 | ||
REACTOME: GRK4 | ||
Pathway Commons: GRK4 | ||
Context | iHOP: GRK4 | |
ligand binding site mutation search in PubMed: GRK4 | ||
UCL Cancer Institute: GRK4 | ||
Assigned class in mutLBSgeneDB | B: This gene belongs to targetable_mutLBSgenes. |
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GO ID | GO Term | PubMed ID | GO:0031623 | receptor internalization | 20074556 |
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Ligand binding site mutations for GRK4 |
![]() We represented ligand binding site mutations only. (You can see big image via clicking.) ![]() |
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LBS | AAchange of nsSNV | Cancer type | # samples | G197 | G197A | LUAD | 1 |
cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
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Protein structure related information for GRK4 |
![]() Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
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![]() Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
LBS | AAchange of nsSNV | Relative stability change | G197 | G197A | -0.89186056 |
(MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
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Differential gene expression and gene-gene network for GRK4 |
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Phenotype information for GRK4 |
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Disease ID | Disease name | # PubMed | Association type |
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Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
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Pharmacological information for GRK4 |
![]() Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient. |
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Drug status | DrugBank ID | Name | Type | Drug structure |
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Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | AN2 | AMP PHOSPHORAMIDATE | 4yhj | A | G197 | AN2 | AMP PHOSPHORAMIDATE | 4yhj | B | G197 |
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Conservation information for LBS of GRK4 |
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LBS | AA sequence | # species | Species | A214 | TGKMYACKKLE | 2 | Mus musculus, Rattus norvegicus | A214 | TGKMYACKKLQ | 1 | Homo sapiens | D330 | HIRISDLGLAT | 1 | Homo sapiens | D330 | HIRISDLGLAM | 1 | Mus musculus | D330 | HIRISDLGLAL | 1 | Rattus norvegicus | G194 | QYRVLGKGGFG | 2 | Mus musculus, Rattus norvegicus | G194 | HYRVLGKGGFG | 1 | Homo sapiens | G196 | RVLGKGGFGEV | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | G197 | VLGKGGFGEVC | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | K195 | YRVLGKGGFGE | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | K216 | KMYACKKLEKK | 2 | Mus musculus, Rattus norvegicus | K216 | KMYACKKLQKK | 1 | Homo sapiens | L319 | KPENILLDDHG | 2 | Mus musculus, Rattus norvegicus | L319 | KPENILLDDRG | 1 | Homo sapiens | M267 | LVLTIMNGGDL | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | T265 | LCLVLTIMNGG | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | V201 | GGFGEVCACQV | 3 | Homo sapiens, Mus musculus, Rattus norvegicus |
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