mutLBSgeneDB

mutLBSgeneDB
mutated Ligand Binding Site gene DataBase

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Gene Summary

Ligand Binding Site Mutation Information

Protein Structure Related Information

Gene Expression and Gene-Gene Network

Phenotype Information

Pharmacological Information

Conservation Information for LBS

Gene summary for PAK1
Gene summary
Basic gene Info.Gene symbolPAK1
Gene namep21 protein (Cdc42/Rac)-activated kinase 1
SynonymsPAKalpha
CytomapUCSC genome browser: 11q13-q14
Type of geneprotein-coding
RefGenesNM_001128620.1,
NM_002576.4,
DescriptionSTE20 homolog, yeastalpha-PAKp21/Cdc42/Rac1-activated kinase 1 (STE20 homolog, yeast)p21/Cdc42/Rac1-activated kinase 1 (yeast Ste20-related)p65-PAKserine/threonine-protein kinase PAK 1
Modification date20141207
dbXrefs MIM : 602590
HGNC : HGNC
Ensembl : ENSG00000149269
HPRD : 03995
Vega : OTTHUMG00000165138
ProteinUniProt: Q13153
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_PAK1
BioGPS: 5058
PathwayNCI Pathway Interaction Database: PAK1
KEGG: PAK1
REACTOME: PAK1
Pathway Commons: PAK1
ContextiHOP: PAK1
ligand binding site mutation search in PubMed: PAK1
UCL Cancer Institute: PAK1
Assigned class in mutLBSgeneDBA: This gene has a literature evidence and it belongs to targetable_mutLBSgenes.
References showing study about ligand binding site mutation for PAK1.1. Akinmade, D., Talukder, A. H., Zhang, Y., Luo, W. M., Kumar, R., & Hamburger, A. W. (2008). Phosphorylation of the ErbB3 binding protein Ebp1 by p21-activated kinase 1 in breast cancer cells. British journal of cancer,98(6), 1132-1140. 18283314

Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO TermPubMed ID
GO:0000165MAPK cascade8805275
GO:0006468protein phosphorylation9852149
GO:0031532actin cytoskeleton reorganization9395435
GO:0033138positive regulation of peptidyl-serine phosphorylation19667065
GO:0033148positive regulation of intracellular estrogen receptor signaling pathway16278681
GO:0046777protein autophosphorylation8805275


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Ligand binding site mutations for PAK1
Lollipop-style diagram of mutations at LBS in amino-acid sequence.
We represented ligand binding site mutations only. (You can see big image via clicking.)
 
: non-synonymous mutation on LBS, Circle size denotes number of samples.

Cancer type specific mutLBS sorted by frequency
LBSAAchange of nsSNVCancer type# samples
I312I312SCOAD1
V318,I316L317QCOAD1
V318,I316L317MCOAD1
V318,I316L317PCOAD1
D354V356LLUAD1
I327N326HUCEC1
cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma.


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Protein structure related information for PAK1
Relative protein structure stability change (ΔΔE) using Mupro 1.1
Mupro score denotes assessment of the effect of mutations on thermodynamic stability.
  (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability)
: nsSNV at non-LBS: nsSNV at LBS

nsSNVs sorted by the relative stability change of protein structure by each mutation
Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene.
LBSAAchange of nsSNVRelative stability change
I316L317Q-1.3684023
V318L317Q-1.3684023
I312I312S-1.2129591
I316L317P-1.1848415
V318L317P-1.1848415
I327N326H-1.1706708
V318L317M-1.0814045
I316L317M-1.0814045
D354V356L-0.61652158
(MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132)

Structure image for PAK1 from PDB

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Differential gene expression and gene-gene network for PAK1
Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types

Differential co-expressed gene network based on protein-protein interaction data (CePIN)
* Left PPI network was created from samples with mutations in the LBS of PAK1 and the right PPI network was created from samples without mutations in the LBS of PAK1. Only genes with p-value < 0.05 are shown.
Red circle: input gene. Orange circle: LBSgene. Blue circle: other gene.


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Phenotype information for PAK1
Gene level disease information (DisGeNet)
Disease IDDisease name# PubMedAssociation type
umls:C1458155Breast Neoplasms10AlteredExpression, Biomarker, PostTranslationalModification
umls:C0007134Carcinoma, Renal Cell1Biomarker
umls:C0033687Proteinuria1Biomarker

Mutation level pathogenic information (ClinVar annotation)
Allele IDAA changeClinical significanceOriginPhenotype IDs

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Pharmacological information for PAK1
Gene expression profile of anticancer drug treated cell-lines (CCLE)
Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient.

Gene-centered drug-gene interaction network
Drug information targeting mutLBSgene (Approved drugs only)
Drug statusDrugBank IDNameTypeDrug structure

Gene-centered ligand-gene interaction network

Ligands binding to mutated ligand binding site of PAK1 go to BioLip
Ligand IDLigand short nameLigand long namePDB IDPDB namemutLBS
4OR(S)-N-(TERT-BUTYL)-3-((2-CHLORO-5-ETHYL-8-FLUORO- DIBENZODIAZEPIN-11-YL)AMINO)PYRROLIDINE-1-CARBOXAMIDE4zjjBI312 I327
4OR(S)-N-(TERT-BUTYL)-3-((2-CHLORO-5-ETHYL-8-FLUORO- DIBENZODIAZEPIN-11-YL)AMINO)PYRROLIDINE-1-CARBOXAMIDE4zjjAI312 V318 I327
XR16-[2-CHLORO-4-(1,3-THIAZOL-5-YL)PHENYL]-8-ETHYL-2-{[4- (4-METHYLPIPERAZIN-1-YL)PHENYL]AMINO}PYRIDO[2,3- D]PYRIMIDIN-7(8H)-ONE4eqcAI316 D354
4OQ2-CHLORO-5-ETHYL-8-FLUORO-11-(4-METHYLPIPERAZIN-1-YL)- DIBENZODIAZEPINE4zjiAV318 I327
4OQ2-CHLORO-5-ETHYL-8-FLUORO-11-(4-METHYLPIPERAZIN-1-YL)- DIBENZODIAZEPINE4zjiBV318 I327
4OQ2-CHLORO-5-ETHYL-8-FLUORO-11-(4-METHYLPIPERAZIN-1-YL)- DIBENZODIAZEPINE4zjiCV318 I327
4OQ2-CHLORO-5-ETHYL-8-FLUORO-11-(4-METHYLPIPERAZIN-1-YL)- DIBENZODIAZEPINE4zjiDV318 I327
4OR(S)-N-(TERT-BUTYL)-3-((2-CHLORO-5-ETHYL-8-FLUORO- DIBENZODIAZEPIN-11-YL)AMINO)PYRROLIDINE-1-CARBOXAMIDE4zjjCV318 I327
4OR(S)-N-(TERT-BUTYL)-3-((2-CHLORO-5-ETHYL-8-FLUORO- DIBENZODIAZEPIN-11-YL)AMINO)PYRROLIDINE-1-CARBOXAMIDE4zjjDV318 I327
4PV2,8-DIFLUORO-11-(4-METHYLPIPERAZIN-1-YL)-5H-DIBENZO[B, E][1,4]DIAZEPINE4zloAV318 I327


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Conservation information for LBS of PAK1
Multiple alignments for Q13153 in multiple species
LBSAA sequence# speciesSpecies
A280KIGQGASGTVY3Homo sapiens, Rattus norvegicus, Bos taurus
A280KIGQGASGDVY1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
A280KIGQGASGGVY1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
A280KIGSGASGSVY1Caenorhabditis elegans
A297TGQEVAIKQMN3Homo sapiens, Rattus norvegicus, Bos taurus
A297TNLSVAIKKMN1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
A297TNVSVAIKQMN1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
A297TEAEVAIKQMN1Caenorhabditis elegans
A348VMEYLAGGSLT4Homo sapiens, Caenorhabditis elegans, Rattus norvegicus, Bos taurus
A348VMEYMRGGSLT1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
A348IMEYMEGGSLT1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
A412DFGFCAQITPE3Homo sapiens, Rattus norvegicus, Bos taurus
A412DFGFCAQIDSN1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
A412DFGFCAQINEL1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
A412DFGFCAQLSPE1Caenorhabditis elegans
D354GGSLTDVVTET3Homo sapiens, Rattus norvegicus, Bos taurus
D354GGSLTEVVTNN1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
D354GGSLTDVVTHC1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
D354GGSLTDVVTEC1Caenorhabditis elegans
D393RDIKSDNILLG4Homo sapiens, Caenorhabditis elegans, Rattus norvegicus, Bos taurus
D393RDIKSDNILLS2Schizosaccharomyces pombe (strain 972 / ATCC 24843), Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
D407SVKLTDFGFCA4Homo sapiens, Caenorhabditis elegans, Rattus norvegicus, Bos taurus
D407DIKLTDFGFCA2Schizosaccharomyces pombe (strain 972 / ATCC 24843), Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
E315ELIINEILVMR4Homo sapiens, Caenorhabditis elegans, Rattus norvegicus, Bos taurus
E315EFIVNEILVMK1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
E315ELIINEILVMK1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
E345LWVVMEYLAGG4Homo sapiens, Caenorhabditis elegans, Rattus norvegicus, Bos taurus
E345LWMVMEYMRGG1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
E345LWVIMEYMEGG1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
E461EMIEGEPPYLN4Homo sapiens, Saccharomyces cerevisiae (strain ATCC 204508 / S288c), Rattus norvegicus, Bos taurus
E461EMVEGEPPYLN2Schizosaccharomyces pombe (strain 972 / ATCC 24843), Caenorhabditis elegans
F379LQALEFLHSNQ3Homo sapiens, Rattus norvegicus, Bos taurus
F379LEGLQHLHENG1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
F379LSGLEFLHSKG1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
F379LQALEFLHSRH1Caenorhabditis elegans
F408VKLTDFGFCAQ4Homo sapiens, Caenorhabditis elegans, Rattus norvegicus, Bos taurus
F408IKLTDFGFCAQ2Schizosaccharomyces pombe (strain 972 / ATCC 24843), Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
G277RFEKIGQGASG3Homo sapiens, Rattus norvegicus, Bos taurus
G277NFVKIGQGASG1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
G277NLVKIGQGASG1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
G277KVDKIGSGASG1Caenorhabditis elegans
G279EKIGQGASGTV3Homo sapiens, Rattus norvegicus, Bos taurus
G279VKIGQGASGDV1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
G279VKIGQGASGGV1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
G279DKIGSGASGSV1Caenorhabditis elegans
G282GQGASGTVYTA3Homo sapiens, Rattus norvegicus, Bos taurus
G282GQGASGDVYSA1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
G282GQGASGGVYTA1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
G282GSGASGSVYTA1Caenorhabditis elegans
G350EYLAGGSLTDV4Homo sapiens, Caenorhabditis elegans, Rattus norvegicus, Bos taurus
G350EYMRGGSLTEV1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
G350EYMEGGSLTDV1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
H387SNQVIHRDIKS3Homo sapiens, Rattus norvegicus, Bos taurus
H387ENGIVHRDIKS1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
H387SKGVLHRDIKS1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
H387SRHVIHRDIKS1Caenorhabditis elegans
I276TRFEKIGQGAS3Homo sapiens, Rattus norvegicus, Bos taurus
I276RNFVKIGQGAS1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
I276ANLVKIGQGAS1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
I276RKVDKIGSGAS1Caenorhabditis elegans
I312PKKELIINEIL5Homo sapiens, Saccharomyces cerevisiae (strain ATCC 204508 / S288c), Caenorhabditis elegans, Rattus norvegicus, Bos taurus
I312PKKEFIVNEIL1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
I316LIINEILVMRE4Homo sapiens, Caenorhabditis elegans, Rattus norvegicus, Bos taurus
I316FIVNEILVMKS1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
I316LIINEILVMKG1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
I327NKNPNIVNYLD3Homo sapiens, Rattus norvegicus, Bos taurus
I327HHHKNIVNFID1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
I327SKHPNIVNFID1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
I327NKHANIVNYLD1Caenorhabditis elegans
K299QEVAIKQMNLQ3Homo sapiens, Rattus norvegicus, Bos taurus
K299LSVAIKKMNIN1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
K299VSVAIKQMNLE1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
K299AEVAIKQMNLK1Caenorhabditis elegans
K391IHRDIKSDNIL4Homo sapiens, Caenorhabditis elegans, Rattus norvegicus, Bos taurus
K391VHRDIKSDNIL1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
K391LHRDIKSDNIL1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
K538-----KE--AT3Homo sapiens, Rattus norvegicus, Bos taurus
K538-----KS--IH1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
K538DDNDNEH--IN1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
K538-----KKSIAE1Caenorhabditis elegans
L347VVMEYLAGGSL4Homo sapiens, Caenorhabditis elegans, Rattus norvegicus, Bos taurus
L347MVMEYMRGGSL1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
L347VIMEYMEGGSL1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
L380QALEFLHSNQV3Homo sapiens, Rattus norvegicus, Bos taurus
L380EGLQHLHENGI1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
L380SGLEFLHSKGV1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
L380QALEFLHSRHV1Caenorhabditis elegans
L396KSDNILLGMDG4Homo sapiens, Caenorhabditis elegans, Rattus norvegicus, Bos taurus
L396KSDNILLSLQG1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
L396KSDNILLSMEG1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
L405DGSVKLTDFGF4Homo sapiens, Caenorhabditis elegans, Rattus norvegicus, Bos taurus
L405QGDIKLTDFGF1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
L405EGDIKLTDFGF1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
M319NEILVMRENKN3Homo sapiens, Rattus norvegicus, Bos taurus
M319NEILVMKSHHH1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
M319NEILVMKGSKH1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
M319NEILVMRENKH1Caenorhabditis elegans
M344ELWVVMEYLAG4Homo sapiens, Caenorhabditis elegans, Rattus norvegicus, Bos taurus
M344ELWMVMEYMRG1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
M344DLWVIMEYMEG1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
N322LVMRENKNPNI3Homo sapiens, Rattus norvegicus, Bos taurus
N322LVMKSHHHKNI1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
N322LVMKGSKHPNI1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
N322LVMRENKHANI1Caenorhabditis elegans
N383EFLHSNQVIHR3Homo sapiens, Rattus norvegicus, Bos taurus
N383QHLHENGIVHR1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
N383EFLHSKGVLHR1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
N383EFLHSRHVIHR1Caenorhabditis elegans
N394DIKSDNILLGM4Homo sapiens, Caenorhabditis elegans, Rattus norvegicus, Bos taurus
N394DIKSDNILLSL1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
N394DIKSDNILLSM1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P462MIEGEPPYLNE4Homo sapiens, Saccharomyces cerevisiae (strain ATCC 204508 / S288c), Rattus norvegicus, Bos taurus
P462MVEGEPPYLNE2Schizosaccharomyces pombe (strain 972 / ATCC 24843), Caenorhabditis elegans
Q278FEKIGQGASGT3Homo sapiens, Rattus norvegicus, Bos taurus
Q278FVKIGQGASGD1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q278LVKIGQGASGG1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q278VDKIGSGASGS1Caenorhabditis elegans
S281IGQGASGTVYT3Homo sapiens, Rattus norvegicus, Bos taurus
S281IGQGASGDVYS1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
S281IGQGASGGVYT1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
S281IGSGASGSVYT1Caenorhabditis elegans
S351YLAGGSLTDVV4Homo sapiens, Caenorhabditis elegans, Rattus norvegicus, Bos taurus
S351YMRGGSLTEVV1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
S351YMEGGSLTDVV1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
T20PPMRNTSTMIG3Homo sapiens, Rattus norvegicus, Bos taurus
T20EPVRYEVEDDL1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
T20QFTRVSSSSVI1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
T20PPIRFSSSA--1Caenorhabditis elegans
T406GSVKLTDFGFC4Homo sapiens, Caenorhabditis elegans, Rattus norvegicus, Bos taurus
T406GDIKLTDFGFC2Schizosaccharomyces pombe (strain 972 / ATCC 24843), Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
V284GASGTVYTAMD3Homo sapiens, Rattus norvegicus, Bos taurus
V284GASGDVYSARQ1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
V284GASGGVYTAYE1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
V284GASGSVYTAIE1Caenorhabditis elegans
V318INEILVMRENK4Homo sapiens, Caenorhabditis elegans, Rattus norvegicus, Bos taurus
V318VNEILVMKSHH1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
V318INEILVMKGSK1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
V328KNPNIVNYLDS3Homo sapiens, Rattus norvegicus, Bos taurus
V328HHKNIVNFIDT1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
V328KHPNIVNFIDS1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
V328KHANIVNYLDS1Caenorhabditis elegans
V342GDELWVVMEYL3Homo sapiens, Rattus norvegicus, Bos taurus
V342KSELWMVMEYM1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
V342KGDLWVIMEYM1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
V342CDELWVVMEYL1Caenorhabditis elegans
V385LHSNQVIHRDI3Homo sapiens, Rattus norvegicus, Bos taurus
V385LHENGIVHRDI1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
V385LHSKGVLHRDI1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
V385LHSRHVIHRDI1Caenorhabditis elegans
Y346WVVMEYLAGGS4Homo sapiens, Caenorhabditis elegans, Rattus norvegicus, Bos taurus
Y346WMVMEYMRGGS1Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Y346WVIMEYMEGGS1Saccharomyces cerevisiae (strain ATCC 204508 / S288c)


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