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mutLBSgeneDB |
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| Gene summary for SNX9 |
 Gene summary |
| Basic gene Info. | Gene symbol | SNX9 |
| Gene name | sorting nexin 9 | |
| Synonyms | SDP1|SH3PX1|SH3PXD3A|WISP | |
| Cytomap | UCSC genome browser: 6q25.1-q26 | |
| Type of gene | protein-coding | |
| RefGenes | NM_016224.4, | |
| Description | SH3 and PX domain-containing protein 1SH3 and PX domain-containing protein 3AWiskott-Aldrich syndrome protein (WASP) interactor proteinsorting nexin-9 | |
| Modification date | 20141207 | |
| dbXrefs | MIM : 605952 | |
| HGNC : HGNC | ||
| Ensembl : ENSG00000130340 | ||
| HPRD : 12072 | ||
| Vega : OTTHUMG00000015903 | ||
| Protein | UniProt: Q9Y5X1 go to UniProt's Cross Reference DB Table | |
| Expression | CleanEX: HS_SNX9 | |
| BioGPS: 51429 | ||
| Pathway | NCI Pathway Interaction Database: SNX9 | |
| KEGG: SNX9 | ||
| REACTOME: SNX9 | ||
| Pathway Commons: SNX9 | ||
| Context | iHOP: SNX9 | |
| ligand binding site mutation search in PubMed: SNX9 | ||
| UCL Cancer Institute: SNX9 | ||
| Assigned class in mutLBSgeneDB | C: This gene just belongs to mutLBSgenes. | |
| Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
| GO ID | GO Term | PubMed ID | GO:0032461 | positive regulation of protein oligomerization | 15703209 | GO:0043547 | positive regulation of GTPase activity | 15703209 | GO:0045860 | positive regulation of protein kinase activity | 18388313 | GO:0051044 | positive regulation of membrane protein ectodomain proteolysis | 18353773 | GO:0060988 | lipid tube assembly | 17948057 | GO:0097320 | membrane tubulation | 18388313 |
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| Ligand binding site mutations for SNX9 |
| Lollipop-style diagram of mutations at LBS in amino-acid sequence. We represented ligand binding site mutations only. (You can see big image via clicking.)  : non-synonymous mutation on LBS, Circle size denotes number of samples. |
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| Cancer type specific mutLBS sorted by frequency |
| LBS | AAchange of nsSNV | Cancer type | # samples | R286 | R286G | UCEC | 1 |
| cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
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| Protein structure related information for SNX9 |
| Relative protein structure stability change (ΔΔE) using Mupro 1.1 Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
 : nsSNV at non-LBS : nsSNV at LBS |
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| nsSNVs sorted by the relative stability change of protein structure by each mutation Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
| LBS | AAchange of nsSNV | Relative stability change | R286 | R286G | -1.7763545 |
| (MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
| Structure image for SNX9 from PDB |
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| Differential gene expression and gene-gene network for SNX9 |
| Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types |
| Differential co-expressed gene network based on protein-protein interaction data (CePIN) |
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| Phenotype information for SNX9 |
| Gene level disease information (DisGeNet) |
| Disease ID | Disease name | # PubMed | Association type |
| Mutation level pathogenic information (ClinVar annotation) |
| Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
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| Pharmacological information for SNX9 |
| Drug information targeting mutLBSgene (Approved drugs only) |
| Drug status | DrugBank ID | Name | Type | Drug structure |
| Gene-centered ligand-gene interaction network |
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| Ligands binding to mutated ligand binding site of SNX9 go to BioLip |
| Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | PIB | D-MYO-PHOSPHATIDYLINOSITOL 3-PHOSPHATED (+)-SN-1,2-DI-O-BUTANOYLGLYCERYL,3-O-PHOSPHO | 2rak | A | R286 |
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| Conservation information for LBS of SNX9 |
| Multiple alignments for Q9Y5X1 in multiple species |
| LBS | AA sequence | # species | Species |
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