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mutLBSgeneDB |
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| Gene summary for 55110 |
 Gene summary |
| Basic gene Info. | Gene symbol | 55110 |
| Gene name | ||
| Synonyms | ||
| Cytomap | UCSC genome browser: | |
| Type of gene | ||
| RefGenes | ||
| Description | ||
| Modification date | ||
| dbXrefs | ||
| Protein | UniProt: P61326 go to UniProt's Cross Reference DB Table | |
| Expression | CleanEX: HS_55110 | |
| BioGPS: 55110 | ||
| Pathway | NCI Pathway Interaction Database: 55110 | |
| KEGG: 55110 | ||
| REACTOME: 55110 | ||
| Pathway Commons: 55110 | ||
| Context | iHOP: 55110 | |
| ligand binding site mutation search in PubMed: 55110 | ||
| UCL Cancer Institute: 55110 | ||
| Assigned class in mutLBSgeneDB | ||
| Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
| GO ID | GO Term | PubMed ID |
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| Ligand binding site mutations for 55110 |
| Cancer type specific mutLBS sorted by frequency |
| LBS | AAchange of nsSNV | Cancer type | # samples |
| cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
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| Protein structure related information for 55110 |
| Relative protein structure stability change (ΔΔE) using Mupro 1.1 Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
 : nsSNV at non-LBS : nsSNV at LBS |
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| nsSNVs sorted by the relative stability change of protein structure by each mutation Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
| LBS | AAchange of nsSNV | Relative stability change | R82 | R82Q | -1.4737802 | D66 | D66N | -1.0225694 |
| (MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
| Structure image for 55110 from PDB |
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| Differential gene expression and gene-gene network for 55110 |
| Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types |
| Differential co-expressed gene network based on protein-protein interaction data (CePIN) |
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| Phenotype information for 55110 |
| Gene level disease information (DisGeNet) |
| Disease ID | Disease name | # PubMed | Association type |
| Mutation level pathogenic information (ClinVar annotation) |
| Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
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| Pharmacological information for 55110 |
| Drug information targeting mutLBSgene (Approved drugs only) |
| Drug status | DrugBank ID | Name | Type | Drug structure |
| Gene-centered ligand-gene interaction network |
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| Ligands binding to mutated ligand binding site of 55110 go to BioLip |
| Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | III | Peptide ligand (ILE,ARG,ASN,LYS,ASP,ARG,PRO,ALA,MET,GLN,LEU,TYR,GLN,PRO,GLY) | 2xb2 | C | D66 | III | Peptide ligand (HIS,LEU,ASP,ASP,ASP,GLU,ASP,ARG,LYS,ASN,PRO,ALA,TYR,ILE,PRO,ARG,LYS,GLY,LEU,PHE,PHE,GLU,HIS,ASP,LEU,ARG,GLY,GLN) | 2j0s | C | R82 |
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| Conservation information for LBS of 55110 |
| Multiple alignments for P61326 in multiple species |
| LBS | AA sequence | # species | Species | D66 | KRIIDDSEITK | 5 | Homo sapiens, Bos taurus, Mus musculus, Rattus norvegicus, Gallus gallus | F17 | GHKGKFGHEFL | 5 | Homo sapiens, Bos taurus, Mus musculus, Rattus norvegicus, Gallus gallus | G15 | YVGHKGKFGHE | 5 | Homo sapiens, Bos taurus, Mus musculus, Rattus norvegicus, Gallus gallus | H13 | RYYVGHKGKFG | 5 | Homo sapiens, Bos taurus, Mus musculus, Rattus norvegicus, Gallus gallus | K16 | VGHKGKFGHEF | 5 | Homo sapiens, Bos taurus, Mus musculus, Rattus norvegicus, Gallus gallus | K41 | NNSNYKNDVMI | 5 | Homo sapiens, Bos taurus, Mus musculus, Rattus norvegicus, Gallus gallus | L107 | SKIGSLIDVNQ | 5 | Homo sapiens, Bos taurus, Mus musculus, Rattus norvegicus, Gallus gallus | R82 | WPPPDRVGRQE | 5 | Homo sapiens, Bos taurus, Mus musculus, Rattus norvegicus, Gallus gallus | V83 | PPPDRVGRQEL | 5 | Homo sapiens, Bos taurus, Mus musculus, Rattus norvegicus, Gallus gallus | Y40 | ANNSNYKNDVM | 5 | Homo sapiens, Bos taurus, Mus musculus, Rattus norvegicus, Gallus gallus |
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