mutLBSgeneDB |
Gene summary for CBX8 |
Gene summary |
Basic gene Info. | Gene symbol | CBX8 |
Gene name | chromobox homolog 8 | |
Synonyms | PC3|RC1 | |
Cytomap | UCSC genome browser: 17q25.3 | |
Type of gene | protein-coding | |
RefGenes | NM_020649.2, | |
Description | Pc class 3 homologchromobox homolog 8 (Pc class homolog, Drosophila)chromobox protein homolog 8polycomb 3rectachrome 1 | |
Modification date | 20141207 | |
dbXrefs | HGNC : HGNC | |
HPRD : 13006 | ||
Protein | UniProt: Q9HC52 go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_CBX8 | |
BioGPS: 57332 | ||
Pathway | NCI Pathway Interaction Database: CBX8 | |
KEGG: CBX8 | ||
REACTOME: CBX8 | ||
Pathway Commons: CBX8 | ||
Context | iHOP: CBX8 | |
ligand binding site mutation search in PubMed: CBX8 | ||
UCL Cancer Institute: CBX8 | ||
Assigned class in mutLBSgeneDB | C: This gene just belongs to mutLBSgenes. |
Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
GO ID | GO Term | PubMed ID |
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Ligand binding site mutations for CBX8 |
Lollipop-style diagram of mutations at LBS in amino-acid sequence. We represented ligand binding site mutations only. (You can see big image via clicking.) : non-synonymous mutation on LBS, Circle size denotes number of samples. |
Cancer type specific mutLBS sorted by frequency |
LBS | AAchange of nsSNV | Cancer type | # samples | L53 | A55V | BLCA | 1 | W35 | S36P | STAD | 1 | T41 | S40I | UCEC | 1 |
cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
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Protein structure related information for CBX8 |
Relative protein structure stability change (ΔΔE) using Mupro 1.1 Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
: nsSNV at non-LBS: nsSNV at LBS |
nsSNVs sorted by the relative stability change of protein structure by each mutation Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
LBS | AAchange of nsSNV | Relative stability change | T41 | S40I | -0.53392806 | L53 | A55V | -0.23055233 | W35 | S36P | -0.17901093 |
(MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
Structure image for CBX8 from PDB |
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Differential gene expression and gene-gene network for CBX8 |
Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types |
Differential co-expressed gene network based on protein-protein interaction data (CePIN) |
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Phenotype information for CBX8 |
Gene level disease information (DisGeNet) |
Disease ID | Disease name | # PubMed | Association type |
Mutation level pathogenic information (ClinVar annotation) |
Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
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Pharmacological information for CBX8 |
Gene expression profile of anticancer drug treated cell-lines (CCLE) Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient. |
Drug information targeting mutLBSgene (Approved drugs only) |
Drug status | DrugBank ID | Name | Type | Drug structure |
Gene-centered ligand-gene interaction network |
Ligands binding to mutated ligand binding site of CBX8 go to BioLip |
Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | III | Peptide ligand (GLN,THR,ALA,ARG,LYS,SER,THR,GLY) | 3i91 | A | W35 L53 | III | Peptide ligand (5R0,PHE,ALA,LEU,ELY,5R5) | 5eq0 | A | W35 T41 L53 |
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Conservation information for LBS of CBX8 |
Multiple alignments for Q9HC52 in multiple species |
LBS | AA sequence | # species | Species |
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