|
mutLBSgeneDB |
| |
| |
| |
| |
| |
| |
|
| Gene summary for CTDSP1 |
 Gene summary |
| Basic gene Info. | Gene symbol | CTDSP1 |
| Gene name | CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 | |
| Synonyms | NIF3|NLI-IF|NLIIF|SCP1 | |
| Cytomap | UCSC genome browser: 2q35 | |
| Type of gene | protein-coding | |
| RefGenes | NM_001206878.1, NM_021198.2,NM_182642.2,NM_001206879.1, | |
| Description | NLI-interacting factor 3carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1nuclear LIM interactor-interacting factor 3small C-terminal domain phosphatase 1 | |
| Modification date | 20141207 | |
| dbXrefs | MIM : 605323 | |
| HGNC : HGNC | ||
| Ensembl : ENSG00000144579 | ||
| HPRD : 05615 | ||
| Vega : OTTHUMG00000133109 | ||
| Protein | UniProt: Q9GZU7 go to UniProt's Cross Reference DB Table | |
| Expression | CleanEX: HS_CTDSP1 | |
| BioGPS: 58190 | ||
| Pathway | NCI Pathway Interaction Database: CTDSP1 | |
| KEGG: CTDSP1 | ||
| REACTOME: CTDSP1 | ||
| Pathway Commons: CTDSP1 | ||
| Context | iHOP: CTDSP1 | |
| ligand binding site mutation search in PubMed: CTDSP1 | ||
| UCL Cancer Institute: CTDSP1 | ||
| Assigned class in mutLBSgeneDB | C: This gene just belongs to mutLBSgenes. | |
| Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
| GO ID | GO Term | PubMed ID | GO:0006357 | regulation of transcription from RNA polymerase II promoter | 12721286 | GO:0006470 | protein dephosphorylation | 12721286 |
| Top |
| Ligand binding site mutations for CTDSP1 |
| Cancer type specific mutLBS sorted by frequency |
| LBS | AAchange of nsSNV | Cancer type | # samples | L155,K157 | A156T | HNSC | 1 |
| cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
| Top |
| Protein structure related information for CTDSP1 |
| Relative protein structure stability change (ΔΔE) using Mupro 1.1 Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
 : nsSNV at non-LBS : nsSNV at LBS |
 |
| nsSNVs sorted by the relative stability change of protein structure by each mutation Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
| LBS | AAchange of nsSNV | Relative stability change | K157 | A156T | -0.78904895 | L155 | A156T | -0.78904895 |
| (MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
| Structure image for CTDSP1 from PDB |
| Top |
| Differential gene expression and gene-gene network for CTDSP1 |
| Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types |
| Differential co-expressed gene network based on protein-protein interaction data (CePIN) |
| Top |
| Top |
| Phenotype information for CTDSP1 |
| Gene level disease information (DisGeNet) |
| Disease ID | Disease name | # PubMed | Association type |
| Mutation level pathogenic information (ClinVar annotation) |
| Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
| Top |
| Pharmacological information for CTDSP1 |
| Gene expression profile of anticancer drug treated cell-lines (CCLE) Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient. |
 |
| Gene-centered drug-gene interaction network |
 |
| Drug information targeting mutLBSgene (Approved drugs only) |
| Drug status | DrugBank ID | Name | Type | Drug structure |
| Experimental | DB04156 | Aspartate Beryllium Trifluoride | Small molecule |  |
| Nutraceutical|vet_approved | DB04272 | Citric Acid | Small molecule |  |
| Gene-centered ligand-gene interaction network |
 |
| Ligands binding to mutated ligand binding site of CTDSP1 go to BioLip |
| Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | III | Peptide ligand (SER,PRO,THR,SER,PRO) | 2ghq | A | L155 | III | Peptide ligand (SER,PRO,THR,SER,PRO) | 2ght | A | L155 | III | Peptide ligand (SER,PRO,THR,4CG) | 4yh1 | A | L155 | III | Peptide ligand (SER,PRO,THR,4CG) | 4yh1 | B | L155 | III | Peptide ligand (PRO,SER,TYR,SER,PRO,THR,SER,PRO,SER) | 2ghq | B | L155 K157 | III | Peptide ligand (SER,TYR,SER,PRO,THR,SER,PRO,SER) | 2ght | B | L155 K157 |
| Top |
| Conservation information for LBS of CTDSP1 |
| Multiple alignments for Q9GZU7 in multiple species |
| LBS | AA sequence | # species | Species |
 |
Copyright © 2016-Present - The University of Texas Health Science Center at Houston |