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mutLBSgeneDB |
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| Gene summary for RABIF |
 Gene summary |
| Basic gene Info. | Gene symbol | RABIF |
| Gene name | RAB interacting factor | |
| Synonyms | MSS4|RASGFR3|RASGRF3 | |
| Cytomap | UCSC genome browser: 1q32.1 | |
| Type of gene | protein-coding | |
| RefGenes | NM_002871.4, | |
| Description | Ras-specific guanine-releasing factor 3guanine nucleotide exchange factor MSS4mammalian suppressor of SEC4rab-interacting factor | |
| Modification date | 20141207 | |
| dbXrefs | MIM : 603417 | |
| HGNC : HGNC | ||
| HPRD : 04566 | ||
| Protein | UniProt: P47224 go to UniProt's Cross Reference DB Table | |
| Expression | CleanEX: HS_RABIF | |
| BioGPS: 5877 | ||
| Pathway | NCI Pathway Interaction Database: RABIF | |
| KEGG: RABIF | ||
| REACTOME: RABIF | ||
| Pathway Commons: RABIF | ||
| Context | iHOP: RABIF | |
| ligand binding site mutation search in PubMed: RABIF | ||
| UCL Cancer Institute: RABIF | ||
| Assigned class in mutLBSgeneDB | C: This gene just belongs to mutLBSgenes. | |
| Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
| GO ID | GO Term | PubMed ID |
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| Ligand binding site mutations for RABIF |
| Cancer type specific mutLBS sorted by frequency |
| LBS | AAchange of nsSNV | Cancer type | # samples | C26 | R25C | COAD | 1 |
| cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
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| Protein structure related information for RABIF |
| Relative protein structure stability change (ΔΔE) using Mupro 1.1 Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
 : nsSNV at non-LBS : nsSNV at LBS |
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| nsSNVs sorted by the relative stability change of protein structure by each mutation Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
| LBS | AAchange of nsSNV | Relative stability change | C26 | R25C | -1.1882445 |
| (MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
| Structure image for RABIF from PDB |
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| Differential gene expression and gene-gene network for RABIF |
| Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types |
| Differential co-expressed gene network based on protein-protein interaction data (CePIN) |
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| Phenotype information for RABIF |
| Gene level disease information (DisGeNet) |
| Disease ID | Disease name | # PubMed | Association type |
| Mutation level pathogenic information (ClinVar annotation) |
| Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
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| Pharmacological information for RABIF |
| Gene expression profile of anticancer drug treated cell-lines (CCLE) Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient. |
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| Drug information targeting mutLBSgene (Approved drugs only) |
| Drug status | DrugBank ID | Name | Type | Drug structure |
| Gene-centered ligand-gene interaction network |
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| Ligands binding to mutated ligand binding site of RABIF go to BioLip |
| Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | ZN | ZINC(2+) | 1fwq | A | C26 | ZN | ZINC(2+) | 2fu5 | A | C26 | ZN | ZINC(2+) | 2fu5 | B | C26 |
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| Conservation information for LBS of RABIF |
| Multiple alignments for P47224 in multiple species |
| LBS | AA sequence | # species | Species | C23 | RKAVLCQRCGS | 4 | Homo sapiens, Rattus norvegicus, Rattus norvegicus, Mus musculus | C23 | KSNVRCQFCNC | 1 | Drosophila melanogaster | C26 | VLCQRCGSRVL | 4 | Homo sapiens, Rattus norvegicus, Rattus norvegicus, Mus musculus | C26 | VRCQFCNCLML | 1 | Drosophila melanogaster | C94 | IKFLVCADCEI | 2 | Homo sapiens, Mus musculus | C94 | VKFLVCADCEI | 2 | Rattus norvegicus, Rattus norvegicus | C94 | RKFLVCADCER | 1 | Drosophila melanogaster | C97 | LVCADCEIGPI | 4 | Homo sapiens, Rattus norvegicus, Rattus norvegicus, Mus musculus | C97 | LVCADCERGPV | 1 | Drosophila melanogaster |
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