mutLBSgeneDB

mutLBSgeneDB
mutated Ligand Binding Site gene DataBase

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	Gene Summary
	Ligand Binding Site Mutation Information
	Protein Structure Related Information
	Gene Expression and Gene-Gene Network
	Phenotype Information
	Pharmacological Information
	Conservation Information for LBS

Gene summary for BPHL

Gene summary

Basic gene Info.	Gene symbol	BPHL
	Gene name	biphenyl hydrolase-like (serine hydrolase)
	Synonyms	BPH-RP\|MCNAA\|VACVASE
	Cytomap	UCSC genome browser: 6p25
	Type of gene	protein-coding
	RefGenes	NM_001302777.1, NM_004332.3,NR_026648.2,NR_026649.2,NR_026650.1,
	Description	biphenyl hydrolase-related proteinbreast epithelial mucin-associated antigenvalacyclovir hydrolasevalacyclovirase
	Modification date	20141207
dbXrefs	MIM : 603156
	HGNC : HGNC
	Ensembl : ENSG00000137274
	HPRD : 04403
	Vega : OTTHUMG00000014140
Protein	UniProt: Q86WA6 go to UniProt's Cross Reference DB Table
Expression	CleanEX: HS_BPHL
	BioGPS: 670
Pathway	NCI Pathway Interaction Database: BPHL
	KEGG: BPHL
	REACTOME: BPHL
	Pathway Commons: BPHL
Context	iHOP: BPHL
	ligand binding site mutation search in PubMed: BPHL
	UCL Cancer Institute: BPHL
Assigned class in mutLBSgeneDB	C: This gene just belongs to mutLBSgenes.

Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez

GO ID

GO Term

PubMed ID

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Ligand binding site mutations for BPHL

Lollipop-style diagram of mutations at LBS in amino-acid sequence.
We represented ligand binding site mutations only. (You can see big image via clicking.)

: non-synonymous mutation on LBS, Circle size denotes number of samples.

Cancer type specific mutLBS sorted by frequency

LBS	AAchange of nsSNV	Cancer type	# samples
D95	W94C	LUAD	1
D140	G142D	LUAD	1
E74	D76N	LUSC	1
D95	R97Q	UCEC	1

cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma.

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Protein structure related information for BPHL

Relative protein structure stability change (ΔΔE) using Mupro 1.1
Mupro score denotes assessment of the effect of mutations on thermodynamic stability.
(ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability)

: nsSNV at non-LBS

: nsSNV at LBS

nsSNVs sorted by the relative stability change of protein structure by each mutation
Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene.

LBS	AAchange of nsSNV	Relative stability change
D95	W94C	-1.2797458
D140	G142D	-0.9478068
E74	D76N	-0.63107116
D95	R97Q	-0.57529282

(MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132)

Structure image for BPHL from PDB

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Differential gene expression and gene-gene network for BPHL

Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types

Differential co-expressed gene network based on protein-protein interaction data (CePIN)

* Left PPI network was created from samples with mutations in the LBS of BPHL and the right PPI network was created from samples without mutations in the LBS of BPHL. Only genes with p-value < 0.05 are shown.
Red circle: input gene. Orange circle: LBSgene. Blue circle: other gene.

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Phenotype information for BPHL

Gene level disease information (DisGeNet)

Disease ID

Disease name

# PubMed

Association type

Mutation level pathogenic information (ClinVar annotation)

Allele ID

AA change

Clinical significance

Origin

Phenotype IDs

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Pharmacological information for BPHL

Gene expression profile of anticancer drug treated cell-lines (CCLE)
Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient.