mutLBSgeneDB

mutLBSgeneDB
mutated Ligand Binding Site gene DataBase

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Gene Summary

Ligand Binding Site Mutation Information

Protein Structure Related Information

Gene Expression and Gene-Gene Network

Phenotype Information

Pharmacological Information

Conservation Information for LBS

Gene summary for SRC
Gene summary
Basic gene Info.Gene symbolSRC
Gene nameSRC proto-oncogene, non-receptor tyrosine kinase
SynonymsASV|SRC1|c-SRC|p60-Src
CytomapUCSC genome browser: 20q12-q13
Type of geneprotein-coding
RefGenesNM_005417.4,
NM_198291.2,
Descriptionproto-oncogene c-Srcproto-oncogene tyrosine-protein kinase Srcprotooncogene SRC, Rous sarcomatyrosine kinase pp60c-srctyrosine-protein kinase SRC-1v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog
Modification date20141222
dbXrefs MIM : 190090
HGNC : HGNC
Ensembl : ENSG00000197122
HPRD : 01819
Vega : OTTHUMG00000032417
ProteinUniProt: P12931
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_SRC
BioGPS: 6714
PathwayNCI Pathway Interaction Database: SRC
KEGG: SRC
REACTOME: SRC
Pathway Commons: SRC
ContextiHOP: SRC
ligand binding site mutation search in PubMed: SRC
UCL Cancer Institute: SRC
Assigned class in mutLBSgeneDBB: This gene belongs to targetable_mutLBSgenes.

Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO TermPubMed ID
GO:0018108peptidyl-tyrosine phosphorylation22732588
GO:0035556intracellular signal transduction15248232
GO:0046777protein autophosphorylation16441665


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Ligand binding site mutations for SRC
Lollipop-style diagram of mutations at LBS in amino-acid sequence.
We represented ligand binding site mutations only. (You can see big image via clicking.)
 
: non-synonymous mutation on LBS, Circle size denotes number of samples.

Cancer type specific mutLBS sorted by frequency
LBSAAchange of nsSNVCancer type# samples
D407D407HOV3
E181E181KBLCA1
R391R391CBLCA1
D407D407HCOAD1
I339,T341V340ICOAD1
G347G347EGBM1
Q278Q278EGBM1
T218R220SLUAD1
E342E342KSKCM1
T218R220SSTAD1
Y134G133CUCEC1
W121W121RUCEC1
T341T341AUCEC1
cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma.

Clinical information for SRC from My Cancer Genome.
SRC proto-oncogene, non-receptor tyrosine kinase (SRC) is a gene that encodes a protein that functions in the regulation of embryonic development and cell growth. Missense mutations, nonsense mutations, silent mutations, and frameshift deletions are observed in cancers such as endometrial cancer, intestinal cancer, and skin cancer.Related Pathways: Cellular architecture and microenvironment, MAP kinase signaling.Modified: December 4, 2015

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Protein structure related information for SRC
Relative protein structure stability change (ΔΔE) using Mupro 1.1
Mupro score denotes assessment of the effect of mutations on thermodynamic stability.
  (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability)
: nsSNV at non-LBS: nsSNV at LBS

nsSNVs sorted by the relative stability change of protein structure by each mutation
Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene.
LBSAAchange of nsSNVRelative stability change
G347G347E0.21066801
D407D407H-0.99559609
E342E342K-0.9846787
R391R391C-0.87244935
Q278Q278E-0.7424231
T218R220S-0.73327049
I339V340I-0.5216996
T341V340I-0.5216996
E181E181K-0.43972086
T341T341A-0.43953865
Y134G133C-0.42103568
W121W121R-0.056642361
(MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132)

Structure image for SRC from PDB
PDB IDPDB titlePDB structure
1A07C-SRC (SH2 DOMAIN) COMPLEXED WITH ACE-MALONYL TYR-GLU-(N,N-DIPENTYL AMINE)

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Differential gene expression and gene-gene network for SRC
Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types

Differential co-expressed gene network based on protein-protein interaction data (CePIN)
* Left PPI network was created from samples with mutations in the LBS of SRC and the right PPI network was created from samples without mutations in the LBS of SRC. Only genes with p-value < 0.05 are shown.
Red circle: input gene. Orange circle: LBSgene. Blue circle: other gene.


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Phenotype information for SRC
Gene level disease information (DisGeNet)
Disease IDDisease name# PubMedAssociation type
umls:C1458155Breast Neoplasms14AlteredExpression, Biomarker
umls:C0009375Colonic Neoplasms7AlteredExpression, Biomarker, PostTranslationalModification
umls:C0027626Neoplasm Invasiveness2Biomarker
umls:C0005695Urinary Bladder Neoplasms2Biomarker
umls:C0038220Status Epilepticus1Biomarker
umls:C0018800Cardiomegaly1Biomarker
umls:C0009319Colitis1Biomarker
umls:C0085548Polycystic Kidney, Autosomal Recessive1Biomarker

Mutation level pathogenic information (ClinVar annotation)
Allele IDAA changeClinical significanceOriginPhenotype IDs

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Pharmacological information for SRC
Gene expression profile of anticancer drug treated cell-lines (CCLE)
Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient.

Gene-centered drug-gene interaction network
Drug information targeting mutLBSgene (Approved drugs only)
Drug statusDrugBank IDNameTypeDrug structure
Approved|investigationalDB01254DasatinibSmall molecule
ExperimentalDB01678RU84687Small molecule
ExperimentalDB01866RU79256Small molecule
ExperimentalDB01893N6-Benzyl Adenosine-5'-DiphosphateSmall molecule
ExperimentalDB01908RU85493Small molecule
ExperimentalDB01947RU78262Small molecule
ExperimentalDB01962PhosphonotyrosineSmall molecule
ExperimentalDB02175Malonic acidSmall molecule
ExperimentalDB02336RU83876Small molecule
ExperimentalDB02432RU90395Small molecule
ExperimentalDB02762RU79072Small molecule
ExperimentalDB02908RU78783Small molecule
ExperimentalDB030231-Tert-Butyl-3-(4-Chloro-Phenyl)-1h-Pyrazolo[3,4-D]Pyrimidin-4-YlamineSmall molecule
ExperimentalDB03078PASBNSmall molecule
ExperimentalDB03104RU82129Small molecule
ExperimentalDB03114PAS219Small molecule
ExperimentalDB03217DPI59Small molecule
ExperimentalDB03268RU82197Small molecule
ExperimentalDB03298PhenylphosphateSmall molecule
ExperimentalDB03306RU78300Small molecule
ExperimentalDB03525RU79073Small molecule
ExperimentalDB03591RU82209Small molecule
ExperimentalDB03628ISO24Small molecule
ExperimentalDB03712RU85053Small molecule
ExperimentalDB03828RU78299Small molecule
ExperimentalDB03902Oxalic AcidSmall molecule
ExperimentalDB04080RU78191Small molecule
Nutraceutical|vet_approvedDB04272Citric AcidSmall molecule
ExperimentalDB04495RU81843Small molecule
ExperimentalDB047394-[(4-METHYL-1-PIPERAZINYL)METHYL]-N-[3-[[4-(3-PYRIDINYL)-2-PYRIMIDINYL]AMINO]PHENYL]-BENZAMIDESmall molecule
ExperimentalDB04751Purvalanol ASmall molecule
InvestigationalDB05184XL228Small molecule
ApprovedDB06616BosutinibSmall molecule
ExperimentalDB068821-[1-(3-aminophenyl)-3-tert-butyl-1H-pyrazol-5-yl]-3-naphthalen-1-ylureaSmall molecule
ExperimentalDB068831-[1-(3-aminophenyl)-3-tert-butyl-1H-pyrazol-5-yl]-3-phenylureaSmall molecule
ExperimentalDB073353-[4-AMINO-1-(1-METHYLETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-3-YL]PHENOLSmall molecule
ExperimentalDB07662N-[4-(3-BROMO-PHENYLAMINO)-QUINAZOLIN-6-YL]-ACRYLAMIDESmall molecule
ExperimentalDB07966[4-({4-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]quinazolin-2-yl}amino)phenyl]acetonitrileSmall molecule
ExperimentalDB080521-cyclopentyl-3-(1H-pyrrolo[2,3-b]pyridin-5-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amineSmall molecule
ExperimentalDB080531-cyclobutyl-3-(3,4-dimethoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amineSmall molecule
ExperimentalDB080541-(1-methylethyl)-3-quinolin-6-yl-1H-pyrazolo[3,4-d]pyrimidin-4-amineSmall molecule
ExperimentalDB081922-(4-CARCOXY-5-ISOPROPYLTHIAZOLYL)BENZOPIPERIDINESmall molecule
ExperimentalDB08462N-(4-PHENYLAMINO-QUINAZOLIN-6-YL)-ACRYLAMIDESmall molecule
ExperimentalDB08564(2E)-N-{4-[(3-bromophenyl)amino]quinazolin-6-yl}-4-(dimethylamino)but-2-enamideSmall molecule
ApprovedDB08901PonatinibSmall molecule
ApprovedDB09079NintedanibSmall molecule

Gene-centered ligand-gene interaction network

Ligands binding to mutated ligand binding site of SRC go to BioLip
Ligand IDLigand short nameLigand long namePDB IDPDB namemutLBS
IIIPeptide ligand (ACE,TYR,GLU,DIP)1a08BE181
IIIPeptide ligand (ACE,TYR,GLU,DIP)1a1aAE181
PO4PHOSPHATE ION4f5aAE181
PTRO(4)-PHOSPHO-L-TYROSINE4f5bAE181
IIIPeptide ligand (ACE,TYR,GLU,DIP)1a08AE181 T218
IIIPeptide ligand (ACE,TYR,GLU,DIP)1a09AE181 T218
IIIPeptide ligand (ACE,TYR,GLU,DIP)1a09BE181 T218
IIIPeptide ligand (ACE,TYR,GLU,DIP)1a1aBE181 T218
IIIPeptide ligand (ACE,TYR,GLU,DIP)1a1bAE181 T218
IIIPeptide ligand (ACE,TYR,GLU,DIP)1a1bBE181 T218
IIIPeptide ligand (ACE,TYR,GLU,DIX)1a1cAE181 T218
IIIPeptide ligand (ACE,TYR,GLU,DIX)1a1cBE181 T218
IIIPeptide ligand (ACE,TYR,GLU,DIY)1a1eAE181 T218
IIIPeptide ligand (ACE,TYR,GLU,DIY)1a1eBE181 T218
IIIPeptide ligand (ACE,TYR,GLU,DIP)1a07AT218
IIIPeptide ligand (ACE,TYR,GLU,DIP)1a07BT218
IIIPeptide ligand (ACE,TYR,GLU,GLU,ILE)1shdAT218


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Conservation information for LBS of SRC
Multiple alignments for P12931 in multiple species
LBSAA sequence# speciesSpecies
A296GTTRVAIKTLK5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
A296NSIDVAVKTLR1Drosophila melanogaster
A406LVCKVADFGLA5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
A406NVAKICDFGLA1Drosophila melanogaster
C188TKGAYCLSVSD4Homo sapiens, Gallus gallus, Mus musculus, Rattus norvegicus
C188NPNGYSLSVKD1Drosophila melanogaster
C188TKGAYCLSVLD1Danio rerio
C241HADGLCHRLTT3Homo sapiens, Mus musculus, Rattus norvegicus
C241NALGLCHILSR1Drosophila melanogaster
C241HADGLCHSLTD1Danio rerio
C241HADGLCHRLTN1Gallus gallus
D120---EGDWWLAH3Homo sapiens, Gallus gallus, Rattus norvegicus
D120---ESDWWRVV1Drosophila melanogaster
D120---EGDWWLAR1Danio rerio
D120DVREGDWWLAH1Mus musculus
D238YSKHADGLCHR4Homo sapiens, Gallus gallus, Mus musculus, Rattus norvegicus
D238YSKNALGLCHI1Drosophila melanogaster
D238YRQHADGLCHS1Danio rerio
D351KGSLLDFLKGE4Homo sapiens, Gallus gallus, Mus musculus, Rattus norvegicus
D351KGSLLDFLREG1Drosophila melanogaster
D351QGSLLDFLKGD1Danio rerio
D389NYVHRDLRAAN5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
D389QLIHRDLAARN1Drosophila melanogaster
D407VCKVADFGLAR5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
D407VAKICDFGLAR1Drosophila melanogaster
E118-----EGDWWL4Homo sapiens, Danio rerio, Gallus gallus, Rattus norvegicus
E118-----ESDWWR1Drosophila melanogaster
E118KVDVREGDWWL1Mus musculus
E160KITRRESERLL4Homo sapiens, Gallus gallus, Mus musculus, Rattus norvegicus
E160NVLRKEADKLL1Drosophila melanogaster
E160KITRRDSERLL1Danio rerio
E181LVRESETTKGA5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
E181LVRPSEHNPNG1Drosophila melanogaster
E313EAFLQEAQVMK5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
E313AAFLQEAAIMK1Drosophila melanogaster
E342IYIVTEYMSKG2Homo sapiens, Gallus gallus
E342IYIVTEYMNKG2Mus musculus, Rattus norvegicus
E342IYIVQEYMSKG1Drosophila melanogaster
E342IYIVTEYMGQG1Danio rerio
G119----EGDWWLA4Homo sapiens, Danio rerio, Gallus gallus, Rattus norvegicus
G119----ESDWWRV1Drosophila melanogaster
G119VDVREGDWWLA1Mus musculus
G239SKHADGLCHRL4Homo sapiens, Gallus gallus, Mus musculus, Rattus norvegicus
G239SKNALGLCHIL1Drosophila melanogaster
G239RQHADGLCHSL1Danio rerio
G277LEVKLGQGCFG4Homo sapiens, Gallus gallus, Mus musculus, Rattus norvegicus
G277LLRKLGRGNFG1Drosophila melanogaster
G277LDVKLGQGCFG1Danio rerio
G279VKLGQGCFGEV5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
G279RKLGRGNFGEV1Drosophila melanogaster
G347EYMSKGSLLDF3Homo sapiens, Drosophila melanogaster, Gallus gallus
G347EYMNKGSLLDF2Mus musculus, Rattus norvegicus
G347EYMGQGSLLDF1Danio rerio
H204GLNVKHYKIRK5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
H204GYHVKHYRIKP1Drosophila melanogaster
I156WYFGKITRRES4Homo sapiens, Gallus gallus, Mus musculus, Rattus norvegicus
I156WFFENVLRKEA1Drosophila melanogaster
I156WYFGKITRRDS1Danio rerio
I217SGGFYITSRTQ5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
I217NGGYYIATNQT1Drosophila melanogaster
I297TTRVAIKTLKP5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
I297SIDVAVKTLRE1Drosophila melanogaster
I339EEPIYIVTEYM5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
I339EEPIYIVQEYM1Drosophila melanogaster
K155EWYFGKITRRE4Homo sapiens, Gallus gallus, Mus musculus, Rattus norvegicus
K155DWFFENVLRKE1Drosophila melanogaster
K155EWYFGKITRRD1Danio rerio
K198DFDNAKGLNVK4Homo sapiens, Gallus gallus, Mus musculus, Rattus norvegicus
K198DWEDGRGYHVK1Drosophila melanogaster
K198DYDNVKGLNVK1Danio rerio
K203KGLNVKHYKIR5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
K203RGYHVKHYRIK1Drosophila melanogaster
K206NVKHYKIRKLD5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
K206HVKHYRIKPLD1Drosophila melanogaster
K298TRVAIKTLKPG5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
K298IDVAVKTLREG1Drosophila melanogaster
K346TEYMSKGSLLD2Homo sapiens, Gallus gallus
K346TEYMNKGSLLD2Mus musculus, Rattus norvegicus
K346QEYMSKGSLLD1Drosophila melanogaster
K346TEYMGQGSLLD1Danio rerio
L240KHADGLCHRLT4Homo sapiens, Gallus gallus, Mus musculus, Rattus norvegicus
L240KNALGLCHILS1Drosophila melanogaster
L240QHADGLCHSLT1Danio rerio
L276RLEVKLGQGCF4Homo sapiens, Gallus gallus, Mus musculus, Rattus norvegicus
L276QLLRKLGRGNF1Drosophila melanogaster
L276RLDVKLGQGCF1Danio rerio
L396RAANILVGENL4Homo sapiens, Gallus gallus, Mus musculus, Rattus norvegicus
L396AARNVLIGENN1Drosophila melanogaster
L396RAANILVGDNL1Danio rerio
M317QEAQVMKKLRH5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
M317QEAAIMKKFRH1Drosophila melanogaster
M344IVTEYMSKGSL2Homo sapiens, Gallus gallus
M344IVTEYMNKGSL2Mus musculus, Rattus norvegicus
M344IVQEYMSKGSL1Drosophila melanogaster
M344IVTEYMGQGSL1Danio rerio
N394DLRAANILVGE4Homo sapiens, Gallus gallus, Mus musculus, Rattus norvegicus
N394DLAARNVLIGE1Drosophila melanogaster
N394DLRAANILVGD1Danio rerio
Q278EVKLGQGCFGE4Homo sapiens, Gallus gallus, Mus musculus, Rattus norvegicus
Q278LRKLGRGNFGE1Drosophila melanogaster
Q278DVKLGQGCFGE1Danio rerio
R158FGKITRRESER4Homo sapiens, Gallus gallus, Mus musculus, Rattus norvegicus
R158FENVLRKEADK1Drosophila melanogaster
R158FGKITRRDSER1Danio rerio
R178GTFLVRESETT5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
R178GTFLVRPSEHN1Drosophila melanogaster
R208KHYKIRKLDSG5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
R208KHYRIKPLDNG1Drosophila melanogaster
R391VHRDLRAANIL5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
R391IHRDLAARNVL1Drosophila melanogaster
S180FLVRESETTKG5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
S180FLVRPSEHNPN1Drosophila melanogaster
S345VTEYMSKGSLL2Homo sapiens, Gallus gallus
S345VTEYMNKGSLL2Mus musculus, Rattus norvegicus
S345VQEYMSKGSLL1Drosophila melanogaster
S345VTEYMGQGSLL1Danio rerio
S348YMSKGSLLDFL3Homo sapiens, Drosophila melanogaster, Gallus gallus
S348YMNKGSLLDFL2Mus musculus, Rattus norvegicus
S348YMGQGSLLDFL1Danio rerio
T182VRESETTKGAY5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
T182VRPSEHNPNGY1Drosophila melanogaster
T183RESETTKGAYC5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
T183RPSEHNPNGYS1Drosophila melanogaster
T218GGFYITSRTQF5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
T218GGYYIATNQTF1Drosophila melanogaster
T341PIYIVTEYMSK2Homo sapiens, Gallus gallus
T341PIYIVTEYMNK2Mus musculus, Rattus norvegicus
T341PIYIVQEYMSK1Drosophila melanogaster
T341PIYIVTEYMGQ1Danio rerio
V284GCFGEVWMGTW5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
V284GNFGEVFYGKW1Drosophila melanogaster
V326RHEKLVQLYAV5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
V326RHNRLVALYAV1Drosophila melanogaster
W121--EGDWWLAHS3Homo sapiens, Gallus gallus, Rattus norvegicus
W121--ESDWWRVVN1Drosophila melanogaster
W121--EGDWWLARS1Danio rerio
W121VREGDWWLAHS1Mus musculus
Y134TGQTGYIPSNY4Homo sapiens, Gallus gallus, Mus musculus, Rattus norvegicus
Y134TRQEGLIPLNF1Drosophila melanogaster
Y134TGESGYIPSNY1Danio rerio
Y187TTKGAYCLSVS4Homo sapiens, Gallus gallus, Mus musculus, Rattus norvegicus
Y187HNPNGYSLSVK1Drosophila melanogaster
Y187TTKGAYCLSVL1Danio rerio
Y205LNVKHYKIRKL5Homo sapiens, Danio rerio, Gallus gallus, Mus musculus, Rattus norvegicus
Y205YHVKHYRIKPL1Drosophila melanogaster
Y233QLVAYYSKHAD4Homo sapiens, Gallus gallus, Mus musculus, Rattus norvegicus
Y233ALVMAYSKNAL1Drosophila melanogaster
Y233QLVNHYRQHAD1Danio rerio
Y343YIVTEYMSKGS2Homo sapiens, Gallus gallus
Y343YIVTEYMNKGS2Mus musculus, Rattus norvegicus
Y343YIVQEYMSKGS1Drosophila melanogaster
Y343YIVTEYMGQGS1Danio rerio


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