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mutLBSgeneDB |
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| Gene summary for SRF |
 Gene summary |
| Basic gene Info. | Gene symbol | SRF |
| Gene name | serum response factor (c-fos serum response element-binding transcription factor) | |
| Synonyms | MCM1 | |
| Cytomap | UCSC genome browser: 6p21.1 | |
| Type of gene | protein-coding | |
| RefGenes | NM_001292001.1, NM_003131.3, | |
| Description | serum response factor | |
| Modification date | 20141207 | |
| dbXrefs | MIM : 600589 | |
| HGNC : HGNC | ||
| Ensembl : ENSG00000112658 | ||
| HPRD : 02788 | ||
| Vega : OTTHUMG00000014722 | ||
| Protein | UniProt: P11831 go to UniProt's Cross Reference DB Table | |
| Expression | CleanEX: HS_SRF | |
| BioGPS: 6722 | ||
| Pathway | NCI Pathway Interaction Database: SRF | |
| KEGG: SRF | ||
| REACTOME: SRF | ||
| Pathway Commons: SRF | ||
| Context | iHOP: SRF | |
| ligand binding site mutation search in PubMed: SRF | ||
| UCL Cancer Institute: SRF | ||
| Assigned class in mutLBSgeneDB | B: This gene belongs to targetable_mutLBSgenes. | |
| Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
| GO ID | GO Term | PubMed ID | GO:0001829 | trophectodermal cell differentiation | 17576768 | GO:0006366 | transcription from RNA polymerase II promoter | 3203386 | GO:0009725 | response to hormone | 17975004 | GO:0010735 | positive regulation of transcription via serum response element binding | 3203386 | GO:0045597 | positive regulation of cell differentiation | 17576768 | GO:0045944 | positive regulation of transcription from RNA polymerase II promoter | 17576768 | GO:0045987 | positive regulation of smooth muscle contraction | 17215356 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity | 19098903 | GO:0060261 | positive regulation of transcription initiation from RNA polymerase II promoter | 8887666 |
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| Ligand binding site mutations for SRF |
| Lollipop-style diagram of mutations at LBS in amino-acid sequence. We represented ligand binding site mutations only. (You can see big image via clicking.)  : non-synonymous mutation on LBS, Circle size denotes number of samples. |
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| Cancer type specific mutLBS sorted by frequency |
| LBS | AAchange of nsSNV | Cancer type | # samples | G142 | M142V | COAD | 1 | S162 | P162L | UCEC | 1 | K154 | Q154R | UCEC | 1 |
| cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
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| Protein structure related information for SRF |
| Relative protein structure stability change (ΔΔE) using Mupro 1.1 Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
 : nsSNV at non-LBS : nsSNV at LBS |
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| nsSNVs sorted by the relative stability change of protein structure by each mutation Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
| LBS | AAchange of nsSNV | Relative stability change |
| (MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
| Structure image for SRF from PDB |
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| Differential gene expression and gene-gene network for SRF |
| Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types |
| Differential co-expressed gene network based on protein-protein interaction data (CePIN) |
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| Phenotype information for SRF |
| Gene level disease information (DisGeNet) |
| Disease ID | Disease name | # PubMed | Association type |
| umls:C0019693 | HIV Infections | 1 | Biomarker |
| umls:C0027651 | Neoplasms | 1 | Therapeutic |
| Mutation level pathogenic information (ClinVar annotation) |
| Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
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| Pharmacological information for SRF |
| Gene expression profile of anticancer drug treated cell-lines (CCLE) Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient. |
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| Drug information targeting mutLBSgene (Approved drugs only) |
| Drug status | DrugBank ID | Name | Type | Drug structure |
| Gene-centered ligand-gene interaction network |
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| Ligands binding to mutated ligand binding site of SRF go to BioLip |
| Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | NUC | Nucleic Acids | 1hbx | A | G142 | NUC | Nucleic Acids | 1hbx | A | G142 | NUC | Nucleic Acids | 1hbx | B | G142 | NUC | Nucleic Acids | 1hbx | D | G142 | NUC | Nucleic Acids | 1hbx | D | G142 | NUC | Nucleic Acids | 1hbx | E | G142 | NUC | Nucleic Acids | 1k6o | B | G142 | NUC | Nucleic Acids | 1k6o | C | G142 | NUC | Nucleic Acids | 1k6o | C | G142 | NUC | Nucleic Acids | 1srs | A | G142 | NUC | Nucleic Acids | 1srs | A | G142 | NUC | Nucleic Acids | 1srs | B | G142 | NUC | Nucleic Acids | 1hbx | B | G142 K154 S162 | NUC | Nucleic Acids | 1hbx | E | G142 K154 S162 | NUC | Nucleic Acids | 1srs | B | G142 K154 S162 | NUC | Nucleic Acids | 1k6o | B | G142 S162 |
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| Conservation information for LBS of SRF |
| Multiple alignments for P11831 in multiple species |
| LBS | AA sequence | # species | Species |
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