mutLBSgeneDB |
Gene summary for UBC |
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Basic gene Info. | Gene symbol | UBC |
Gene name | ubiquitin C | |
Synonyms | HMG20 | |
Cytomap | UCSC genome browser: 12q24.3 | |
Type of gene | protein-coding | |
RefGenes | NM_021009.6, | |
Description | polyubiquitin-C | |
Modification date | 20141207 | |
dbXrefs | MIM : 191340 | |
HGNC : HGNC | ||
Ensembl : ENSG00000150991 | ||
HPRD : 07038 | ||
Vega : OTTHUMG00000044421 | ||
Protein | UniProt: P0CG48 go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_UBC | |
BioGPS: 7316 | ||
Pathway | NCI Pathway Interaction Database: UBC | |
KEGG: UBC | ||
REACTOME: UBC | ||
Pathway Commons: UBC | ||
Context | iHOP: UBC | |
ligand binding site mutation search in PubMed: UBC | ||
UCL Cancer Institute: UBC | ||
Assigned class in mutLBSgeneDB | C: This gene just belongs to mutLBSgenes. |
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GO ID | GO Term | PubMed ID |
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Ligand binding site mutations for UBC |
![]() We represented ligand binding site mutations only. (You can see big image via clicking.) ![]() |
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LBS | AAchange of nsSNV | Cancer type | # samples | D52 | D52G | COAD | 1 | D52 | G53W | LUAD | 1 | D52 | D52N | OV | 1 | E24 | N25I | STAD | 1 |
cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
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Protein structure related information for UBC |
![]() Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
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![]() Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
LBS | AAchange of nsSNV | Relative stability change | D52 | D52N | -1.1255948 | D52 | D52G | -1.0573969 | E24 | N25I | -0.77102261 | D52 | G53W | -0.495325 |
(MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
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Differential gene expression and gene-gene network for UBC |
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Phenotype information for UBC |
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Disease ID | Disease name | # PubMed | Association type |
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Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
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Pharmacological information for UBC |
![]() Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient. |
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Drug status | DrugBank ID | Name | Type | Drug structure |
Experimental | DB04464 | N-Formylmethionine | Small molecule | ![]() |
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Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | ZN | ZINC(2+) | 3h7s | B | E24 D52 |
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Conservation information for LBS of UBC |
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LBS | AA sequence | # species | Species |
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