mutLBSgeneDB |
Gene summary for XRCC1 |
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Basic gene Info. | Gene symbol | XRCC1 |
Gene name | X-ray repair complementing defective repair in Chinese hamster cells 1 | |
Synonyms | RCC | |
Cytomap | UCSC genome browser: 19q13.2 | |
Type of gene | protein-coding | |
RefGenes | NM_006297.2, | |
Description | DNA repair protein XRCC1X-ray repair cross-complementing protein 1 | |
Modification date | 20141222 | |
dbXrefs | MIM : 194360 | |
HGNC : HGNC | ||
Ensembl : ENSG00000073050 | ||
HPRD : 01909 | ||
Vega : OTTHUMG00000182699 | ||
Protein | UniProt: P18887 go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_XRCC1 | |
BioGPS: 7515 | ||
Pathway | NCI Pathway Interaction Database: XRCC1 | |
KEGG: XRCC1 | ||
REACTOME: XRCC1 | ||
Pathway Commons: XRCC1 | ||
Context | iHOP: XRCC1 | |
ligand binding site mutation search in PubMed: XRCC1 | ||
UCL Cancer Institute: XRCC1 | ||
Assigned class in mutLBSgeneDB | C: This gene just belongs to mutLBSgenes. |
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GO ID | GO Term | PubMed ID |
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Ligand binding site mutations for XRCC1 |
![]() We represented ligand binding site mutations only. (You can see big image via clicking.) ![]() |
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LBS | AAchange of nsSNV | Cancer type | # samples | E81 | E81D | LUSC | 1 | K129 | R127L | SKCM | 1 | K129 | K129E | UCEC | 1 |
cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
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Protein structure related information for XRCC1 |
![]() Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
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![]() Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
LBS | AAchange of nsSNV | Relative stability change | K129 | R127L | -0.93803962 | E81 | E81D | -0.40399581 | K129 | K129E | -0.35989414 |
(MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
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Differential gene expression and gene-gene network for XRCC1 |
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Phenotype information for XRCC1 |
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Disease ID | Disease name | # PubMed | Association type |
umls:C0038356 | Stomach Neoplasms | 19 | Biomarker, GeneticVariation |
umls:C1961102 | Precursor Cell Lymphoblastic Leukemia-Lymphoma | 9 | Biomarker, GeneticVariation |
umls:C0279626 | Esophageal Squamous Cell Carcinoma | 9 | Biomarker, GeneticVariation |
umls:C0033578 | Prostatic Neoplasms | 4 | Biomarker, GeneticVariation |
umls:C0028797 | Occupational Diseases | 3 | Biomarker, GeneticVariation |
umls:C0041834 | Erythema | 3 | Biomarker |
umls:C0025500 | Mesothelioma | 2 | Biomarker, GeneticVariation |
umls:C0038362 | Stomatitis | 2 | Biomarker, GeneticVariation |
umls:C1449861 | Micronuclei, Chromosome-Defective | 2 | Biomarker |
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Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
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Pharmacological information for XRCC1 |
![]() Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient. |
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Drug status | DrugBank ID | Name | Type | Drug structure |
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Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | CO3 | CARBONATE | 3lqc | A | E81 K129 |
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Conservation information for LBS of XRCC1 |
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LBS | AA sequence | # species | Species | E3 | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | E81 | GATAGEQDYEV | 2 | Mus musculus, Rattus norvegicus | E81 | G--AGEQDYEV | 1 | Homo sapiens | K129 | RWDRVKIVCSQ | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | P2 | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | R7 | PEISLRHVVSC | 2 | Mus musculus, Rattus norvegicus | R7 | PEIRLRHVVSC | 1 | Homo sapiens | S44 | GEKTISVVLQL | 3 | Homo sapiens, Mus musculus, Rattus norvegicus |
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