Gene: Clptm1

Basic information

Tag Content
Uniprot ID B2RYF6
Entrez ID 292696
Genbank protein ID EDM08175.1; AAI66760.1;
Genbank nucleotide ID NM_001106232.1
Ensembl protein ID ENSRNOP00000024779
Ensembl nucleotide ID ENSRNOG00000018255
Gene name CLPTM1 regulator of GABA type A receptor forward-trafficking
Gene symbol Clptm1
Organism Rattus norvegicus
NCBI taxa ID 10116
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description
Sequence
MAAAQEADGA GSAVVAAGGG SSGQVTSNGS IGRDTPAETQ PQNPPPQPAP NAWQVIKGVL 60
FRIFIIWAIS SWFRRGPSPQ DQSGPGGAPR VASRNLFPKD TLMNLHVYIS EHEHFTDFNA 120
TSALFWEQHD LVYGDWTSGE NSDGCYEHFA ELDIPQSVQQ NGSIYIHVYF TKSGFHPDPR 180
QKALYRRLAT VHMSRMINKY KRRRFQKTKN LLTGETEADP EMIKRAEDYG PVEVISHWHP 240
NITINIVDDH TPWVKGSVPP PLDQYVKFDA VSGDYYPIIY FNDYWNLQKD YYPINESLAS 300
LPLRVSFCPL SLWRWQLYAA QSTKSPWNFL GDELYEQSDE EQDSVKVALL ETSPYLLALT 360
IIVSIVHSVF EFLAFKNDIQ FWNSRQSLEG LSVRSVFFGV FQSFVVLLYI LDNETNFVVQ 420
VSVFIGVLID LWKITKVMDV RLDREHRVAG IFPCPTFRDK STYIESSTKV YDDMAFRYLS 480
WILFPLLGCY AVYSLLYLEH KGWYSWVLSM LYGFLLTFGF ITMTPQLFIN YKLKSVAHLP 540
WRMLTYKALN TFIDDLFAFV IKMPVMYRIG CLRDDVVFFI YLYQRWIYRV DPTRVNEFGM 600
SGEDVSAAAS GAQASTAAGA LTPSPSTAVT GEDASTVPTA TPGACTASQP QEDPPKPAED 660
KKKD 664

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologCLPTM1A0A452DSC6Capra hircusPredictionMore>>
1:1 orthologCLPTM11209O96005Homo sapiensPublicationMore>>
1:1 orthologClptm156457Q8VBZ3Mus musculusPredictionMore>>
1:1 orthologCLPTM1A0A2I3TN30Pan troglodytesPredictionMore>>
1:1 orthologCLPTM1F1RM47Sus scrofaPredictionMore>>
1:1 orthologCLPTM1G1T1T8Oryctolagus cuniculusPredictionMore>>
1:1 orthologClptm1292696B2RYF6Rattus norvegicusPredictionMore>>
1:1 orthologclptm1795480F1R5K1Danio rerioPredictionMore>>

Gene ontology

GO ID GO Term
GO:0009897 external side of plasma membrane
GO:0016021 integral component of membrane
GO:0033081 regulation of T cell differentiation in thymus

Functional annotations

Keywords

Keyword ID Keyword Term
KW-0472 Membrane
KW-1267 Proteomics identification
KW-1185 Reference proteome
KW-0812 Transmembrane
KW-1133 Transmembrane helix

Interpro

InterPro ID InterPro Term
IPR008429 CLPTM1

PROSITE

PROSITE ID PROSITE Term

Pfam

Pfam ID Pfam Term
PF05602 CLPTM1