Gene: SYNE3

Basic information

Tag Content
Uniprot ID H2Q8V7; A0A2J8QMD4; K7DLC8;
Entrez ID
Genbank protein ID JAA43264.1
Genbank nucleotide ID
Ensembl protein ID ENSPTRP00000011407
Ensembl nucleotide ID ENSPTRG00000006691
Gene name Chromosome 14 open reading frame 49
Gene symbol SYNE3
Organism Pan troglodytes
NCBI taxa ID 9598
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description
Sequence
MTQQPQEDFD RSMEDAQAWM KAVQDQLQVN DNTQGPRAAL EARLWETEKI CQLEPEGRVK 60
VDLVLRMAEA LLACCPGDQK PGILARLKDI KAQWEETVTY MTHCHSRIEW VWLHWSEYLL 120
ARDEFYRWFQ KMMVTLEPHI ELQLGLKEKQ WQLSHAQVLL HNVDNQAVLL DRLLEEAASL 180
FNRIGDPSVD EDAQKRMKAE YDAVKAKAQE RVDLLEQVAR EHEEYQAGVD EFQLWLKAVV 240
EKVNGCLGRN CKLPITQRLS TLQDIAKDFP RGEESLERLE EQSVGVIRNT SPLGAEKITG 300
ELEEMRKVLE KLRALWEEEE ERLRGLLQSR GACEQQIKQL EAELSEFRMV LQRLAQEGLQ 360
PAGKAGTEDE LVAHWRRYSA TRAALASEEP RLDWLQAQLK ELIVFPHNLK PLSDSVIAAI 420
QEYQSLKVKS ARLCNAAGVE LWQHFQRPLQ DLQLWKALAQ RLLEVTASLP DLPSLHTFLP 480
QIEAALMESS RLKELLTMLQ LKKDLLIGIF GQERATALLE QVAGSMRDRD LLHNGLLQRK 540
SKLQSLLAQH KDFGAAFEPL QRKLLDLQVR VQAEKGLQRD LPGKQAQLST LQGLQEEGLD 600
LGAQMEAARP LVQENPNHQH KMDQLSSDFQ ALQRSLEDLV DRCRQSVQEH CTFSHQLLEL 660
RQWIVVTTQK LEAHRGEAGP GDAESQEAEF ERLVAEFPEK ETQLSLVEAQ GWLVMEKSSP 720
EGAAVVQEEL RELAESWRAL RLLEESLLSL IRNWHLQRMA VDSGKKMVFT NNIPKSGFLI 780
NPMDPIPRHR RREEEGSHED FSQLLRNFGQ WLQVENSKLV RIIAMRTSTA EDLRTRKSKL 840
QELEARVPEG QHLFENLLRL GPARGTSDEL EDLRYQWMLY KSKLKDSGHL LTQSSPGEPT 900
GFQKTRRWRG LGSLFRRVCC VALPLQLLLL LFLLLLFLLP VREEDRSCTL ANNFARSFTL 960
MLRYNGPPPT

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologSYNE3520207A0A3Q1MN88Bos taurusPredictionMore>>
1:1 orthologSYNE3A0A452EF11Capra hircusPredictionMore>>
1:1 orthologSYNE3161176Q6ZMZ3Homo sapiensPublicationMore>>
1:1 orthologSyne3212073Q4FZC9Mus musculusPredictionMore>>
1:1 orthologSYNE3H2Q8V7Pan troglodytesPredictionMore>>
1:1 orthologSyne3D3ZD24Rattus norvegicusPredictionMore>>
1:1 orthologsyne3100009645X1WGA9Danio rerioPredictionMore>>

Gene ontology

GO ID GO Term
GO:0005623 cell
GO:0016021 integral component of membrane
GO:0005640 nuclear outer membrane
GO:0008092 cytoskeletal protein binding
GO:0090286 cytoskeletal anchoring at nuclear membrane

Functional annotations

Keywords

Keyword ID Keyword Term
KW-0175 Coiled coil
KW-0472 Membrane
KW-1185 Reference proteome
KW-0677 Repeat
KW-0812 Transmembrane
KW-1133 Transmembrane helix

Interpro

InterPro ID InterPro Term
IPR012315 KASH
IPR018159 Spectrin/alpha-actinin
IPR002017 Spectrin_repeat
IPR030267 SYNE3

PROSITE

PROSITE ID PROSITE Term
PS51049 KASH

Pfam

Pfam ID Pfam Term
PF10541 KASH
PF00435 Spectrin