| General information | Literature | Expression | Regulation | Variant | Interaction |
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Basic Information |
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|---|---|
Gene ID | 51517 |
Name | NCKIPSD |
Synonymous | AF3P21|DIP|DIP1|ORF1|SPIN90|WASLBP|WISH;NCK interacting protein with SH3 domain;NCKIPSD;NCK interacting protein with SH3 domain |
Definition | 54 kDa VacA-interacting protein|54 kDa vimentin-interacting protein|90 kDa SH3 protein interacting with Nck|DIP-1|NCK-interacting protein with SH3 domain|SH3 adapter protein SPIN90|SH3 protein interacting with Nck, 90 kDa|VIP54|WASP-interacting SH3-domain |
Position | 3p21 |
Gene Type | protein-coding |
Gene Regulation: | ENCODE RegulomeDB Transcription Factors Post Transcriptional Modification From dbPTM Methylation Profile From DiseaseMeth database |
ENCODE RegulomeDB [Top] | |||
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Link to UCSC genome |
Matched SNP location |
dbSNP ID |
Regulatory information |
chr3:48701364-48723797 | chr3:48702606-48702606 | rs9811318 | Single_Nucleotides|eQTL|QRICH1, Single_Nucleotides|eQTL|USP19, Single_Nucleotides|eQTL|WDR6, Single_Nucleotides|eQTL|WDR6, Motifs|Footprinting|REST, Motifs|PWM|REST, Motifs|PWM|NRSF, Motifs|Footprinting|REST, Motifs|Footprinting|NRSF, Motifs|PWM|REST, Motifs|Footprinting|REST, Motifs|Footprinting|NRSF, Motifs|PWM|NRSF, Motifs|PWM|REST, Chromatin_Structure|DNase-seq|Hepatocytes, Chromatin_Structure|DNase-seq|Gm12891, Chromatin_Structure|DNase-seq|Gm19238, Chromatin_Structure|DNase-seq|8988t, Protein_Binding|ChIP-seq|POLR2A, Protein_Binding|ChIP-seq|POLR2A, Protein_Binding|ChIP-seq|POLR2A, Protein_Binding|ChIP-seq|POLR2A | chr3:48701364-48723797 | chr3:48712791-48712791 | rs9836462 | Single_Nucleotides|eQTL|QRICH1, Single_Nucleotides|eQTL|USP19, Single_Nucleotides|eQTL|WDR6, Single_Nucleotides|eQTL|WDR6, Single_Nucleotides|eQTL|USP4, Single_Nucleotides|eQTL|WDR6, Chromatin_Structure|DNase-seq|8988t | chr3:48701364-48723797 | chr3:48713570-48713570 | rs9841602 | Single_Nucleotides|eQTL|QRICH1, Single_Nucleotides|eQTL|USP19, Single_Nucleotides|eQTL|WDR6, Single_Nucleotides|eQTL|WDR6, Chromatin_Structure|DNase-seq|Medullo, Chromatin_Structure|FAIRE|Htr8 | chr3:48701364-48723797 | chr3:48721040-48721040 | rs990211 | Single_Nucleotides|eQTL|P4HTM, Single_Nucleotides|eQTL|RHOA, Chromatin_Structure|DNase-seq|Hepatocytes, Chromatin_Structure|DNase-seq|Lncap, Chromatin_Structure|DNase-seq|Lncap, Chromatin_Structure|DNase-seq|Stellate, Chromatin_Structure|DNase-seq|Myometr, Chromatin_Structure|DNase-seq|Hmec, Chromatin_Structure|DNase-seq|Huvec, Chromatin_Structure|DNase-seq|8988t, Chromatin_Structure|DNase-seq|Huh75, Chromatin_Structure|DNase-seq|Hsmm, Chromatin_Structure|DNase-seq|Osteobl, Chromatin_Structure|DNase-seq|Sknshra |
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Transcription Factors [Top] |
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Regulation From TransFac database |
mDia2(m) + SPIN90(h) <==> mDia2(m):SPIN90(h) (binding) | mDia1(m) + SPIN90(h) <==> mDia1(m):SPIN90(h) (binding) | Grb-2(v.s.) + SPIN90(h) <==> Grb-2(v.s.):SPIN90(h) (binding) | Nck-1(h) + SPIN90(h) <==> Nck-1(h):SPIN90(h) (binding) | SPIN90(h) + p190RhoGAP(h) <==> SPIN90(h):p190RhoGAP(h) (binding) | SPIN90(h) + Vav-2(h) <==> SPIN90(h):Vav-2(h) (binding) | Nck-2(h) + SPIN90(h) <==> Nck-2(h):SPIN90(h) (binding) | IRSp53(h) + SPIN90(h) <==> IRSp53(h):SPIN90(h) (binding) | SPIN90(h) + Dmrt6(h) <==> SPIN90(h):Dmrt6(h) (binding) | SPIN90(h) + FHOS(h) <==> SPIN90(h):FHOS(h) (binding) | NCKIPSD(h) --> SPIN90(h) (expression). | NCKIPSD(h) --> SPIN90(h) (expression). |
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Post Transcriptional Modification [Top] | |||
There is no record for NCKIPSD | |||
Methylation Profile [Top] | ||
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Chromosome |
Location |
Source |
|---|---|---|
chr3 |
Promoter: 48697838 - 48699838 | Agilent_014791 |
chr3 |
Promoter: 48697838 - 48699838 | GSE27584 |
chr3 |
Promoter: 48697838 - 48699838 | GSE27584 |
chr3 |
Promoter: 48697838 - 48699838 | Agilent_014791_44K |