Gene Page: HMG2L1

Summary
GeneID  10042
Symbol  HMG2L1
Synonyms  HMGBCG|THC211630
Description  high-mobility group protein 2-like 1
See related  HGNC:5003|MIM:604702|Ensembl:ENSG00000100281|HPRD:05267|
Locus tag  RP3-510H16.1
Gene type  protein-coding
Map location  22q13.1
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_Igenome scan meta-analysisPsr: 0.031 
LiteratureHigh-throughput literature-searchCo-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]Click to show detail
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
AATK0.880.87
FAM78A0.850.76
PNPLA70.840.84
KLHL210.840.78
TAPBP0.840.80
TMEM184B0.840.83
FAM102A0.830.83
MLXIPL0.820.73
ZFYVE280.820.80
ABCA20.820.85
Top 10 negatively co-expressed genes
C9orf46-0.56-0.66
RPS3AP47-0.55-0.68
PRDX4-0.53-0.60
RPL24-0.53-0.69
POLB-0.52-0.56
AC008073.1-0.52-0.60
RPL31-0.52-0.66
RPL27-0.52-0.67
RPS23-0.52-0.66
TPT1-0.52-0.64
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0003677DNA bindingIEA-
GO:0003677DNA bindingNAS-
GO:0005509calcium ion bindingIEA-
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0006355regulation of transcription, DNA-dependentIEA-
GO:0008333endosome to lysosome transportNAS10329004 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0000785chromatinIEA-
GO:0005794Golgi apparatusIDA18029348 
GO:0005634nucleusNAS-
GO:0005737cytoplasmIDA18029348 
 
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-1/2069219271Ahsa-miR-1UGGAAUGUAAAGAAGUAUGUA
hsa-miR-206SZUGGAAUGUAAGGAAGUGUGUGG
hsa-miR-613AGGAAUGUUCCUUCUUUGCC
miR-124.12752821A,m8hsa-miR-124aUUAAGGCACGCGGUGAAUGCCA
hsa-miR-124aUUAAGGCACGCGGUGAAUGCCA
miR-124/5064044101Ahsa-miR-506UAAGGCACCCUUCUGAGUAGA
hsa-miR-124brainUAAGGCACGCGGUGAAUGCC
hsa-miR-506UAAGGCACCCUUCUGAGUAGA
hsa-miR-124brainUAAGGCACGCGGUGAAUGCC
miR-132/2126066m8hsa-miR-212SZUAACAGUCUCCAGUCACGGCC
hsa-miR-132brainUAACAGUCUACAGCCAUGGUCG
miR-23351357m8hsa-miR-23abrainAUCACAUUGCCAGGGAUUUCC
hsa-miR-23bbrainAUCACAUUGCCAGGGAUUACC
miR-3233513571Ahsa-miR-323brainGCACAUUACACGGUCGACCUCU
miR-381195519611Ahsa-miR-381UAUACAAGGGCAAGCUCUCUGU
hsa-miR-381UAUACAAGGGCAAGCUCUCUGU
miR-49518981904m8hsa-miR-495brainAAACAAACAUGGUGCACUUCUUU
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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