Gene Page: TOM1

Summary
GeneID  10043
Symbol  TOM1
Synonyms  FLJ33404
Description  target of myb1 (chicken)
See related  HGNC:11982|MIM:604700|Ensembl:ENSG00000100284|HPRD:05265|
Locus tag  CTA-286B10.4
Gene type  protein-coding
Map location  22q13.1
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
LiteratureHigh-throughput literature-searchCo-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]Click to show detail
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
SFRS90.950.93
RANBP10.930.89
AC026691.10.920.90
RNASEH2A0.920.92
DDX390.910.90
BAT40.910.89
H2AFY0.910.90
U2AF10.910.89
SNRPF0.900.85
SFRS30.900.92
Top 10 negatively co-expressed genes
AF347015.33-0.69-0.85
AF347015.27-0.68-0.83
MT-CO2-0.68-0.82
HLA-F-0.68-0.77
AF347015.31-0.68-0.81
MT-CYB-0.67-0.83
AF347015.15-0.66-0.85
AF347015.8-0.66-0.83
AF347015.2-0.65-0.84
AF347015.9-0.64-0.84
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005515protein bindingIPI14613930 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0006897endocytosisNAS10329004 
GO:0006886intracellular protein transportIEA-
GO:0016197endosome transportNAS14613930 
GO:0016197endosome transportTAS10329004 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005813centrosomeIDA18029348 
GO:0005829cytosolIDA14613930 
GO:0005622intracellularIEA-
GO:0005737cytoplasmIEA-
GO:0005764lysosomeTAS10329004 
GO:0005768endosomeTAS10329004 
GO:0005769early endosomeIDA14613930 
GO:0016020membraneIDA14613930 
 
InteractionsShown by Network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
CLTCCHC | CHC17 | CLH-17 | CLTCL2 | Hc | KIAA0034clathrin, heavy chain (Hc)-HPRD,BioGRID14563850 
TOLLIPFLJ33531 | IL-1RAcPIPtoll interacting protein-HPRD,BioGRID14563850 
ZFYVE16DKFZp686E13162 | ENDOFIN | KIAA0305zinc finger, FYVE domain containing 16-HPRD,BioGRID14613930 
Endofin interacts with TOM1.BIND14613930 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
PID_CMYB_PATHWAY 8461All SZGR genes in this pathway
DODD_NASOPHARYNGEAL_CARCINOMA_UP 1821933All SZGR genes in this pathway
ENK_UV_RESPONSE_KERATINOCYTE_UP 530342All SZGR genes in this pathway
CREIGHTON_AKT1_SIGNALING_VIA_MTOR_DN 2316All SZGR genes in this pathway
CONCANNON_APOPTOSIS_BY_EPOXOMICIN_UP 239157All SZGR genes in this pathway
GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN 17811082All SZGR genes in this pathway
BERENJENO_TRANSFORMED_BY_RHOA_DN 394258All SZGR genes in this pathway
JAZAG_TGFB1_SIGNALING_VIA_SMAD4_UP 10866All SZGR genes in this pathway
RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_DN 382224All SZGR genes in this pathway
RICKMAN_TUMOR_DIFFERENTIATED_MODERATELY_VS_POORLY_UP 12171All SZGR genes in this pathway
WANG_CISPLATIN_RESPONSE_AND_XPC_DN 228146All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_UP 16911088All SZGR genes in this pathway
DAZARD_RESPONSE_TO_UV_NHEK_UP 244151All SZGR genes in this pathway
CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_3 720440All SZGR genes in this pathway
GRADE_COLON_CANCER_UP 871505All SZGR genes in this pathway
BLUM_RESPONSE_TO_SALIRASIB_UP 245159All SZGR genes in this pathway
AGUIRRE_PANCREATIC_CANCER_COPY_NUMBER_DN 238145All SZGR genes in this pathway
HOFMANN_MYELODYSPLASTIC_SYNDROM_RISK_UP 2414All SZGR genes in this pathway
CHEN_METABOLIC_SYNDROM_NETWORK 1210725All SZGR genes in this pathway
DAZARD_UV_RESPONSE_CLUSTER_G5 128All SZGR genes in this pathway
BRUINS_UVC_RESPONSE_LATE 1137655All SZGR genes in this pathway
LIM_MAMMARY_STEM_CELL_DN 428246All SZGR genes in this pathway
ZWANG_TRANSIENTLY_UP_BY_1ST_EGF_PULSE_ONLY 1839928All SZGR genes in this pathway
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-126/126-3p5395451Ahsa-miR-126brainUCGUACCGUGAGUAAUAAUGC
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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