| ATF2 | CRE-BP1 | CREB2 | HB16 | MGC111558 | TREB7 | activating transcription factor 2 | - | HPRD,BioGRID | 11713276 |
| BCAS1 | AIBC1 | NABC1 | breast carcinoma amplified sequence 1 | Affinity Capture-MS | BioGRID | 17353931 |
| BCL3 | BCL4 | D19S37 | B-cell CLL/lymphoma 3 | RUVBL2 (reptin) interacts with BCL3. | BIND | 15829968 |
| C19orf2 | FLJ10575 | NNX3 | RMP | URI | chromosome 19 open reading frame 2 | - | HPRD | 14615539 |
| C2orf44 | FLJ21945 | PP384 | chromosome 2 open reading frame 44 | Affinity Capture-MS | BioGRID | 17353931 |
| CD82 | 4F9 | C33 | GR15 | IA4 | KAI1 | R2 | SAR2 | ST6 | TSPAN27 | CD82 molecule | RUVBL2 (reptin) interacts with the CD82 (KAI1) promoter. | BIND | 15829968 |
| CTNNB1 | CTNNB | DKFZp686D02253 | FLJ25606 | FLJ37923 | catenin (cadherin-associated protein), beta 1, 88kDa | CTNNB1 (beta-catenin) interacts with RUVBL2 (reptin). | BIND | 15829968 |
| DNASE2 | DNASE2A | DNL | DNL2 | deoxyribonuclease II, lysosomal | Affinity Capture-MS | BioGRID | 17353931 |
| EP400 | CAGH32 | DKFZP434I225 | FLJ42018 | FLJ45115 | P400 | TNRC12 | E1A binding protein p400 | Affinity Capture-MS | BioGRID | 11509179 |
| FAS | ALPS1A | APO-1 | APT1 | CD95 | FAS1 | FASTM | TNFRSF6 | Fas (TNF receptor superfamily, member 6) | RUVBL2 (reptin) interacts with the FAS promoter. | BIND | 15829968 |
| FDFT1 | DGPT | ERG9 | SQS | SS | farnesyl-diphosphate farnesyltransferase 1 | Two-hybrid | BioGRID | 16169070 |
| HDAC1 | DKFZp686H12203 | GON-10 | HD1 | RPD3 | RPD3L1 | histone deacetylase 1 | RUVBL2 (reptin) interacts with HDAC1. | BIND | 15829968 |
| HDAC4 | HA6116 | HD4 | HDAC-A | HDACA | KIAA0288 | histone deacetylase 4 | RUVBL2 (reptin) interacts with HDAC4. | BIND | 15829968 |
| HDAC5 | FLJ90614 | HD5 | NY-CO-9 | histone deacetylase 5 | RUVBL2 (reptin) interacts with an unspecified isoform of HDAC5. | BIND | 15829968 |
| IKBKE | IKK-i | IKKE | IKKI | KIAA0151 | MGC125294 | MGC125295 | MGC125297 | inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon | Affinity Capture-MS | BioGRID | 17353931 |
| MAP3K14 | FTDCR1B | HS | HSNIK | NIK | mitogen-activated protein kinase kinase kinase 14 | - | HPRD | 14743216 |
| MAP3K3 | MAPKKK3 | MEKK3 | mitogen-activated protein kinase kinase kinase 3 | - | HPRD | 14743216 |
| MAP3K7 | TAK1 | TGF1a | mitogen-activated protein kinase kinase kinase 7 | - | HPRD | 14743216 |
| MAP3K7IP2 | FLJ21885 | KIAA0733 | TAB2 | mitogen-activated protein kinase kinase kinase 7 interacting protein 2 | - | HPRD | 14743216 |
| MYC | bHLHe39 | c-Myc | v-myc myelocytomatosis viral oncogene homolog (avian) | Co-purification | BioGRID | 11839798 |
| NEK6 | SID6-1512 | NIMA (never in mitosis gene a)-related kinase 6 | Affinity Capture-MS | BioGRID | 17353931 |
| NFKB1 | DKFZp686C01211 | EBP-1 | KBF1 | MGC54151 | NF-kappa-B | NFKB-p105 | NFKB-p50 | p105 | nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 | - | HPRD | 14743216 |
| NFKB1 (p50) interacts with RUVBL2 (reptin). | BIND | 15829968 |
| NFKB2 | LYT-10 | LYT10 | nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) | - | HPRD | 14743216 |
| NFKBIE | IKBE | nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon | - | HPRD | 14743216 |
| NME2 | MGC111212 | NDPK-B | NDPKB | NM23-H2 | NM23B | puf | non-metastatic cells 2, protein (NM23B) expressed in | Affinity Capture-MS | BioGRID | 17353931 |
| NOP5/NOP58 | HSPC120 | nucleolar protein NOP5/NOP58 | - | HPRD | 12417735 |
| PCNA | MGC8367 | proliferating cell nuclear antigen | Affinity Capture-MS | BioGRID | 12171929 |
| PLOD2 | LH2 | TLH | procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 | Affinity Capture-MS | BioGRID | 17353931 |
| PON2 | - | paraoxonase 2 | Affinity Capture-MS | BioGRID | 17353931 |
| RELA | MGC131774 | NFKB3 | p65 | v-rel reticuloendotheliosis viral oncogene homolog A (avian) | - | HPRD | 14743216 |
| RGS20 | RGSZ1 | ZGAP1 | regulator of G-protein signaling 20 | Affinity Capture-MS | BioGRID | 17353931 |
| RIOK3 | DKFZp779L1370 | SUDD | RIO kinase 3 (yeast) | Affinity Capture-MS | BioGRID | 17353931 |
| RP11-529I10.4 | DKFZp566F084 | deleted in a mouse model of primary ciliary dyskinesia | Affinity Capture-MS Two-hybrid | BioGRID | 16189514 |17353931
|
| RPS11 | - | ribosomal protein S11 | Affinity Capture-MS | BioGRID | 17353931 |
| RUVBL1 | ECP54 | INO80H | NMP238 | PONTIN | Pontin52 | RVB1 | TIH1 | TIP49 | TIP49A | RuvB-like 1 (E. coli) | Affinity Capture-MS | BioGRID | 17353931 |
| SSSCA1 | p27 | Sjogren syndrome/scleroderma autoantigen 1 | Affinity Capture-MS | BioGRID | 17353931 |
| STAP1 | BRDG1 | STAP-1 | signal transducing adaptor family member 1 | Affinity Capture-MS | BioGRID | 14615539 |
| TBK1 | FLJ11330 | NAK | T2K | TANK-binding kinase 1 | - | HPRD | 14743216 |
| TRAF2 | MGC:45012 | TRAP | TRAP3 | TNF receptor-associated factor 2 | - | HPRD | 14743216 |
| UQCRC1 | D3S3191 | QCR1 | UQCR1 | ubiquinol-cytochrome c reductase core protein I | Affinity Capture-MS | BioGRID | 17353931 |
| USP7 | HAUSP | TEF1 | ubiquitin specific peptidase 7 (herpes virus-associated) | Affinity Capture-MS | BioGRID | 17353931 |