| BTBD2 | - | BTB (POZ) domain containing 2 | Two-hybrid | BioGRID | 16169070 |
| C1orf174 | RP13-531C17.2 | chromosome 1 open reading frame 174 | Two-hybrid | BioGRID | 16169070 |
| C4orf17 | DKFZp434G072 | chromosome 4 open reading frame 17 | Two-hybrid | BioGRID | 16169070 |
| CCDC106 | HSU79303 | ZNF581 | coiled-coil domain containing 106 | Two-hybrid | BioGRID | 16169070 |
| CDH10 | - | cadherin 10, type 2 (T2-cadherin) | Two-hybrid | BioGRID | 16169070 |
| CDKN2C | INK4C | p18 | p18-INK4C | cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) | Two-hybrid | BioGRID | 16169070 |
| COPS2 | ALIEN | CSN2 | SGN2 | TRIP15 | COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis) | CSN2 interacts with CSN6. | BIND | 12615944 |
| COPS3 | SGN3 | COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis) | CSN6 interacts with CSN3. | BIND | 12615944 |
| COPS4 | MGC10899 | MGC15160 | COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) | - | HPRD | 9707402 |14647295
|
| CSN4 interacts with CSN6. | BIND | 12615944 |
| COPS5 | CSN5 | JAB1 | MGC3149 | MOV-34 | SGN5 | COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) | - | HPRD | 12220626 |
| CSN5 interacts with CSN6. | BIND | 12615944 |
| COPS6 | CSN6 | MOV34-34KD | COP9 constitutive photomorphogenic homolog subunit 6 (Arabidopsis) | CSN6 interacts with itself. | BIND | 12615944 |
| COPS8 | COP9 | CSN8 | MGC1297 | MGC43256 | SGN8 | COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis) | Co-purification | BioGRID | 9707402 |
| COX17 | MGC104397 | MGC117386 | COX17 cytochrome c oxidase assembly homolog (S. cerevisiae) | Two-hybrid | BioGRID | 16169070 |
| COX5A | COX | COX-VA | VA | cytochrome c oxidase subunit Va | Two-hybrid | BioGRID | 16169070 |
| CRELD1 | AVSD2 | CIRRIN | DKFZp566D213 | cysteine-rich with EGF-like domains 1 | Two-hybrid | BioGRID | 16169070 |
| CUL1 | MGC149834 | MGC149835 | cullin 1 | - | HPRD | 11337588 |
| DIS3L2 | FAM6A | FLJ36974 | MGC42174 | DIS3 mitotic control homolog (S. cerevisiae)-like 2 | Two-hybrid | BioGRID | 16169070 |
| DLEU1 | BCMS | DLB1 | DLEU2 | LEU1 | LEU2 | MGC22430 | NCRNA00021 | XTP6 | deleted in lymphocytic leukemia 1 (non-protein coding) | Two-hybrid | BioGRID | 16169070 |
| EDN1 | ET1 | HDLCQ7 | endothelin 1 | Two-hybrid | BioGRID | 16169070 |
| EIF3E | EIF3-P48 | EIF3S6 | INT6 | eIF3-p46 | eukaryotic translation initiation factor 3, subunit E | - | HPRD,BioGRID | 12220626 |
| EMD | EDMD | LEMD5 | STA | emerin | Two-hybrid | BioGRID | 16169070 |
| EP300 | KAT3B | p300 | E1A binding protein p300 | Two-hybrid | BioGRID | 16169070 |
| ERH | DROER | FLJ27340 | enhancer of rudimentary homolog (Drosophila) | Two-hybrid | BioGRID | 16169070 |
| FAU | FAU1 | FLJ22986 | Fub1 | Fubi | MNSFbeta | RPS30 | Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed | Two-hybrid | BioGRID | 16169070 |
| HMOX2 | HO-2 | heme oxygenase (decycling) 2 | Two-hybrid | BioGRID | 16169070 |
| LAMA4 | DKFZp686D23145 | LAMA3 | LAMA4*-1 | laminin, alpha 4 | Two-hybrid | BioGRID | 16169070 |
| LPL | HDLCQ11 | LIPD | lipoprotein lipase | Two-hybrid | BioGRID | 16169070 |
| MAP7D1 | FLJ10350 | FLJ39022 | MGC117315 | PARCC1 | RPRC1 | MAP7 domain containing 1 | Two-hybrid | BioGRID | 16169070 |
| MNAT1 | MAT1 | RNF66 | TFB3 | menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis) | Two-hybrid | BioGRID | 16169070 |
| MYCBP | AMY-1 | c-myc binding protein | Two-hybrid | BioGRID | 16169070 |
| NR3C1 | GCCR | GCR | GR | GRL | nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) | - | HPRD | 12237292 |
| ORAI2 | C7orf19 | CBCIP2 | FLJ12474 | FLJ14733 | FLJ44818 | TMEM142B | ORAI calcium release-activated calcium modulator 2 | Two-hybrid | BioGRID | 16169070 |
| PAEP | GD | GdA | GdF | GdS | MGC138509 | MGC142288 | PAEG | PEP | PP14 | progestagen-associated endometrial protein | Two-hybrid | BioGRID | 16169070 |
| PAFAH1B3 | - | platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit 29kDa | Two-hybrid | BioGRID | 16169070 |
| PBX2 | G17 | HOX12 | PBX2MHC | pre-B-cell leukemia homeobox 2 | - | HPRD | 14667819 |
| PDZK1IP1 | DD96 | MAP17 | RP1-18D14.5 | SPAP | PDZK1 interacting protein 1 | Two-hybrid | BioGRID | 16169070 |
| PFKL | DKFZp686G1648 | DKFZp686L2097 | FLJ30173 | FLJ40909 | PFK-B | phosphofructokinase, liver | Two-hybrid | BioGRID | 16169070 |
| PHYHIP | DYRK1AP3 | KIAA0273 | PAHX-AP | PAHXAP1 | phytanoyl-CoA 2-hydroxylase interacting protein | Two-hybrid | BioGRID | 16169070 |
| PMF1 | - | polyamine-modulated factor 1 | Two-hybrid | BioGRID | 16169070 |
| PRKRA | DYT16 | HSD14 | PACT | RAX | protein kinase, interferon-inducible double stranded RNA dependent activator | Two-hybrid | BioGRID | 16169070 |
| PSAP | FLJ00245 | GLBA | MGC110993 | SAP1 | prosaposin | Two-hybrid | BioGRID | 16169070 |
| PSMD11 | MGC3844 | Rpn6 | S9 | p44.5 | proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 | Two-hybrid | BioGRID | 16169070 |
| PTEN | 10q23del | BZS | MGC11227 | MHAM | MMAC1 | PTEN1 | TEP1 | phosphatase and tensin homolog | Two-hybrid | BioGRID | 16169070 |
| QTRT1 | FP3235 | TGT | queuine tRNA-ribosyltransferase 1 | Two-hybrid | BioGRID | 16169070 |
| RAB27A | GS2 | HsT18676 | MGC117246 | RAB27 | RAM | RAB27A, member RAS oncogene family | Two-hybrid | BioGRID | 16169070 |
| RBX1 | BA554C12.1 | MGC13357 | MGC1481 | RNF75 | ROC1 | ring-box 1 | - | HPRD | 11337588 |
| RFC5 | MGC1155 | RFC36 | replication factor C (activator 1) 5, 36.5kDa | Two-hybrid | BioGRID | 16169070 |
| ROGDI | FLJ22386 | rogdi homolog (Drosophila) | Two-hybrid | BioGRID | 16169070 |
| RPA2 | REPA2 | RPA32 | replication protein A2, 32kDa | Two-hybrid | BioGRID | 16169070 |
| RPL15 | EC45 | FLJ26304 | MGC88603 | RPL10 | RPLY10 | RPYL10 | ribosomal protein L15 | Two-hybrid | BioGRID | 16169070 |
| S100A10 | 42C | ANX2L | ANX2LG | CAL1L | CLP11 | Ca[1] | GP11 | MGC111133 | P11 | p10 | S100 calcium binding protein A10 | Two-hybrid | BioGRID | 16169070 |
| SAT1 | DC21 | KFSD | SAT | SSAT | SSAT-1 | spermidine/spermine N1-acetyltransferase 1 | Two-hybrid | BioGRID | 16169070 |
| SERPINA5 | PAI3 | PCI | PLANH3 | PROCI | serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5 | Two-hybrid | BioGRID | 16169070 |
| SERPINB9 | CAP-3 | CAP3 | PI9 | serpin peptidase inhibitor, clade B (ovalbumin), member 9 | Two-hybrid | BioGRID | 16169070 |
| SLC2A1 | DYT17 | DYT18 | GLUT | GLUT1 | MGC141895 | MGC141896 | PED | solute carrier family 2 (facilitated glucose transporter), member 1 | Two-hybrid | BioGRID | 16169070 |
| SMN1 | BCD541 | SMA | SMA1 | SMA2 | SMA3 | SMA4 | SMA@ | SMN | SMNT | T-BCD541 | survival of motor neuron 1, telomeric | Two-hybrid | BioGRID | 16169070 |
| SNRPG | MGC117317 | SMG | small nuclear ribonucleoprotein polypeptide G | Two-hybrid | BioGRID | 16169070 |
| STK40 | MGC4796 | RP11-268J15.4 | SHIK | SgK495 | serine/threonine kinase 40 | Two-hybrid | BioGRID | 16169070 |
| STX5 | SED5 | STX5A | syntaxin 5 | Two-hybrid | BioGRID | 16169070 |
| SULT1E1 | EST | EST-1 | MGC34459 | STE | sulfotransferase family 1E, estrogen-preferring, member 1 | Two-hybrid | BioGRID | 16169070 |
| TDGF1 | CR | CRGF | CRIPTO | Cripto-1 | teratocarcinoma-derived growth factor 1 | Two-hybrid | BioGRID | 16169070 |
| TK1 | TK2 | thymidine kinase 1, soluble | Two-hybrid | BioGRID | 16169070 |
| TRDMT1 | DNMT2 | M.HsaIIP | PuMet | RNMT1 | tRNA aspartic acid methyltransferase 1 | Two-hybrid | BioGRID | 16169070 |
| TRIB3 | C20orf97 | NIPK | SINK | SKIP3 | TRB3 | tribbles homolog 3 (Drosophila) | Two-hybrid | BioGRID | 16169070 |
| WIPI2 | Atg21 | CGI-50 | DKFZp434J154 | DKFZp686P02188 | FLJ12979 | FLJ14217 | FLJ42984 | WIPI-2 | WD repeat domain, phosphoinositide interacting 2 | Two-hybrid | BioGRID | 16169070 |
| ZEB2 | KIAA0569 | SIP-1 | SIP1 | SMADIP1 | ZFHX1B | zinc finger E-box binding homeobox 2 | Two-hybrid | BioGRID | 16169070 |
| ZNF24 | KOX17 | RSG-A | ZNF191 | ZSCAN3 | Zfp191 | zinc finger protein 24 | Two-hybrid | BioGRID | 16169070 |
