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|
| GeneID |
11157
|
| Symbol |
LSM6
|
| Synonyms |
YDR378C
|
| Description |
LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) |
| See related |
HGNC:17017|MIM:607286|Ensembl:ENSG00000164167|HPRD:06286| |
| Locus tag |
- |
| Gene type |
protein-coding |
| Map location |
4q31.22 |
|
| |
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|
| Gene set name |
Method of gene set |
Evidence |
Info |
| Network | Shortest path distance of core genes in the Human protein-protein interaction network | Contribution to shortest path in PPI network: 0.0139 | |
|
| |
| General Gene Expression (microarray) ? |
|
 |
| |
| Gene Expression in Brain Regions (new) |
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| |
| Top co-expressed genes in Brain Regions (new) |
|
| Gene | Pearson's Correlation | Spearman's Correlation | | |
| Top 10 positively co-expressed genes |
| ZNF512 | 0.98 | 0.97 | | |
| SLC39A6 | 0.97 | 0.95 | | |
| GART | 0.97 | 0.94 | | |
| C2orf44 | 0.97 | 0.96 | | |
| TNPO3 | 0.96 | 0.95 | | |
| XRCC5 | 0.96 | 0.97 | | |
| XRN2 | 0.96 | 0.95 | | |
| CAPRIN1 | 0.96 | 0.95 | | |
| XPO5 | 0.96 | 0.94 | | |
| C12orf41 | 0.96 | 0.94 | | |
Top 10 negatively co-expressed genes | | AF347015.31 | -0.77 | -0.90 | | |
| MT-CO2 | -0.77 | -0.90 | | |
| AF347015.27 | -0.77 | -0.89 | | |
| HLA-F | -0.76 | -0.80 | | |
| AF347015.33 | -0.76 | -0.88 | | |
| AIFM3 | -0.76 | -0.81 | | |
| MT-CYB | -0.75 | -0.89 | | |
| AF347015.8 | -0.75 | -0.90 | | |
| FXYD1 | -0.74 | -0.88 | | |
| C5orf53 | -0.74 | -0.75 | | |
|
| Molecular function | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0003723 | RNA binding | IEA | | - |
| GO:0005515 | protein binding | IPI | | 15231747 |
| Biological process | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0006397 | mRNA processing | IEA | | - |
| GO:0008380 | RNA splicing | TAS | | 10523320 |
| GO:0006364 | rRNA processing | IEA | | - |
| GO:0008033 | tRNA processing | IEA | | - |
| Cellular component | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0005634 | nucleus | IEA | | - |
| GO:0005737 | cytoplasm | IEA | | - |
| GO:0030532 | small nuclear ribonucleoprotein complex | TAS | | 10523320 |
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