Gene Page: CNTF
Summary ?
GeneID | 1270 |
Symbol | CNTF |
Synonyms | HCNTF |
Description | ciliary neurotrophic factor |
Reference | MIM:118945|HGNC:HGNC:2169|Ensembl:ENSG00000242689|HPRD:00347|Vega:OTTHUMG00000137476 |
Gene type | protein-coding |
Map location | 11q12.2 |
Pascal p-value | 0.745 |
Fetal beta | 0.195 |
Gene in Data Sources
Gene set name | Method of gene set | Description | Info |
---|---|---|---|
CV:PGCnp | Genome-wide Association Study | GWAS | |
PMID:cooccur | High-throughput literature-search | Systematic search in PubMed for genes co-occurring with SCZ keywords. A total of 3027 genes were included. | |
Literature | High-throughput literature-search | Co-occurance with Schizophrenia keywords: schizophrenia,schizophrenic,schizophrenics,schizophrenias | Click to show details |
GO_Annotation | Mapping neuro-related keywords to Gene Ontology annotations | Hits with neuro-related keywords: 2 |
Section I. Genetics and epigenetics annotation
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section III. Gene Ontology annotation
Molecular function | GO term | Evidence | Neuro keywords | PubMed ID |
---|---|---|---|---|
GO:0005127 | ciliary neurotrophic factor receptor binding | TAS | neurotrophic (GO term level: 6) | 1714745 |
GO:0005515 | protein binding | IPI | 17353931 | |
GO:0008083 | growth factor activity | IEA | - | |
Biological process | GO term | Evidence | Neuro keywords | PubMed ID |
GO:0007399 | nervous system development | IEA | neurite (GO term level: 5) | - |
GO:0007165 | signal transduction | NAS | 1840538 | |
GO:0007275 | multicellular organismal development | IEA | - | |
GO:0030154 | cell differentiation | IEA | - | |
GO:0040007 | growth | IEA | - | |
Cellular component | GO term | Evidence | Neuro keywords | PubMed ID |
GO:0005737 | cytoplasm | IEA | - |
Section IV. Protein-protein interaction annotation
Interactors | Aliases B | Official full name B | Experimental | Source | PubMed ID |
---|---|---|---|---|---|
APOE | AD2 | LPG | MGC1571 | apoprotein | apolipoprotein E | Apolipoprotein E binds to ciliary neurotrophic factor | BIND | 9236223 |
CNTF | HCNTF | ciliary neurotrophic factor | - | HPRD,BioGRID | 7796798 |
CNTFR | MGC1774 | ciliary neurotrophic factor receptor | - | HPRD,BioGRID | 7810882 |10812968 |
EIF3E | EIF3-P48 | EIF3S6 | INT6 | eIF3-p46 | eukaryotic translation initiation factor 3, subunit E | Affinity Capture-MS | BioGRID | 17353931 |
EXT1 | EXT | LGCR | LGS | TRPS2 | ttv | exostoses (multiple) 1 | Affinity Capture-MS | BioGRID | 17353931 |
EXT2 | SOTV | exostoses (multiple) 2 | Affinity Capture-MS | BioGRID | 17353931 |
ICA1 | ICA69 | ICAp69 | islet cell autoantigen 1, 69kDa | Affinity Capture-MS | BioGRID | 17353931 |
IL6R | CD126 | IL-6R-1 | IL-6R-alpha | IL6RA | MGC104991 | interleukin 6 receptor | - | HPRD,BioGRID | 1281789 |
IL6ST | CD130 | CDw130 | GP130 | GP130-RAPS | IL6R-beta | interleukin 6 signal transducer (gp130, oncostatin M receptor) | - | HPRD | 12643274 |
LIFR | CD118 | FLJ98106 | FLJ99923 | LIF-R | SJS2 | STWS | SWS | leukemia inhibitory factor receptor alpha | - | HPRD | 12643274 |
STK16 | FLJ39635 | KRCT | MPSK | PKL12 | TSF1 | serine/threonine kinase 16 | Affinity Capture-MS | BioGRID | 17353931 |
VHL | HRCA1 | RCA1 | VHL1 | von Hippel-Lindau tumor suppressor | Affinity Capture-MS | BioGRID | 17353931 |
Section V. Pathway annotation
Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
---|---|---|---|
KEGG CYTOKINE CYTOKINE RECEPTOR INTERACTION | 267 | 161 | All SZGR 2.0 genes in this pathway |
KEGG JAK STAT SIGNALING PATHWAY | 155 | 105 | All SZGR 2.0 genes in this pathway |
GRAESSMANN APOPTOSIS BY DOXORUBICIN DN | 1781 | 1082 | All SZGR 2.0 genes in this pathway |
MARSON BOUND BY FOXP3 UNSTIMULATED | 1229 | 713 | All SZGR 2.0 genes in this pathway |
YOSHIMURA MAPK8 TARGETS DN | 366 | 257 | All SZGR 2.0 genes in this pathway |
PANGAS TUMOR SUPPRESSION BY SMAD1 AND SMAD5 DN | 157 | 106 | All SZGR 2.0 genes in this pathway |
CHYLA CBFA2T3 TARGETS DN | 242 | 146 | All SZGR 2.0 genes in this pathway |
NABA SECRETED FACTORS | 344 | 197 | All SZGR 2.0 genes in this pathway |
NABA MATRISOME ASSOCIATED | 753 | 411 | All SZGR 2.0 genes in this pathway |
NABA MATRISOME | 1028 | 559 | All SZGR 2.0 genes in this pathway |