Gene Page: C1orf87
Summary ?
| GeneID | 127795 |
| Symbol | C1orf87 |
| Synonyms | CREF |
| Description | chromosome 1 open reading frame 87 |
| Reference | HGNC:HGNC:28547|Ensembl:ENSG00000162598|HPRD:11338|Vega:OTTHUMG00000008992 |
| Gene type | protein-coding |
| Map location | 1p32.1 |
| Pascal p-value | 0.081 |
| Fetal beta | 0.104 |
| eGene | Myers' cis & trans Meta |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:GWASdb | Genome-wide Association Studies | GWASdb records for schizophrenia | |
| CV:PGCnp | Genome-wide Association Study | GWAS | |
| GSMA_IIA | Genome scan meta-analysis (All samples) | Psr: 0.02692 |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs596985 | chr1 | 64277034 | C1orf87 | 127795 | 0.05 | trans | ||
| rs6659821 | chr1 | 110339827 | C1orf87 | 127795 | 0.03 | trans | ||
| rs16838771 | chr1 | 157511227 | C1orf87 | 127795 | 1.057E-4 | trans | ||
| rs6713473 | chr2 | 11284414 | C1orf87 | 127795 | 0 | trans | ||
| rs17019687 | chr2 | 80972176 | C1orf87 | 127795 | 0.03 | trans | ||
| rs13412567 | chr2 | 110457213 | C1orf87 | 127795 | 0.14 | trans | ||
| rs6413977 | 0 | C1orf87 | 127795 | 0.01 | trans | |||
| rs4346320 | chr2 | 142150284 | C1orf87 | 127795 | 0.01 | trans | ||
| rs7565413 | chr2 | 142151284 | C1orf87 | 127795 | 0.01 | trans | ||
| rs12633404 | chr3 | 80381837 | C1orf87 | 127795 | 0.16 | trans | ||
| rs9882567 | chr3 | 188988929 | C1orf87 | 127795 | 0.02 | trans | ||
| rs10075513 | chr5 | 117091552 | C1orf87 | 127795 | 0.17 | trans | ||
| rs6900976 | chr6 | 721998 | C1orf87 | 127795 | 0.15 | trans | ||
| rs9397728 | chr6 | 150514248 | C1orf87 | 127795 | 0.01 | trans | ||
| rs17694984 | chr8 | 18444909 | C1orf87 | 127795 | 0.16 | trans | ||
| rs16908145 | chr8 | 139037972 | C1orf87 | 127795 | 0.07 | trans | ||
| rs10958892 | chr9 | 10125117 | C1orf87 | 127795 | 0.07 | trans | ||
| rs10958896 | chr9 | 10126894 | C1orf87 | 127795 | 0.02 | trans | ||
| rs10958899 | chr9 | 10128700 | C1orf87 | 127795 | 3.131E-4 | trans | ||
| rs10958907 | chr9 | 10131580 | C1orf87 | 127795 | 4.05E-4 | trans | ||
| rs1322159 | chr9 | 10132695 | C1orf87 | 127795 | 2.875E-4 | trans | ||
| rs11044062 | chr12 | 8371319 | C1orf87 | 127795 | 0.15 | trans | ||
| rs2297479 | chr12 | 125591249 | C1orf87 | 127795 | 0.07 | trans | ||
| rs11656351 | chr17 | 9489574 | C1orf87 | 127795 | 0.01 | trans | ||
| rs236517 | chr17 | 68275174 | C1orf87 | 127795 | 0.15 | trans | ||
| rs11080561 | chr18 | 12257229 | C1orf87 | 127795 | 0.03 | trans | ||
| rs16951170 | chr18 | 47402487 | C1orf87 | 127795 | 0.01 | trans | ||
| rs16962554 | chr19 | 29590544 | C1orf87 | 127795 | 0 | trans | ||
| rs7268640 | chr20 | 47150267 | C1orf87 | 127795 | 1.412E-8 | trans | ||
| rs1883665 | chrX | 17650382 | C1orf87 | 127795 | 0 | trans | ||
| rs7062071 | chrX | 17724830 | C1orf87 | 127795 | 2.333E-6 | trans | ||
| rs7879274 | chrX | 145592957 | C1orf87 | 127795 | 0.05 | trans |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| SENGUPTA NASOPHARYNGEAL CARCINOMA DN | 349 | 157 | All SZGR 2.0 genes in this pathway |
| DODD NASOPHARYNGEAL CARCINOMA UP | 1821 | 933 | All SZGR 2.0 genes in this pathway |
| RAO BOUND BY SALL4 ISOFORM A | 182 | 108 | All SZGR 2.0 genes in this pathway |