Gene Page: COL9A1

Summary
GeneID  1297
Symbol  COL9A1
Synonyms  DJ149L1.1.2|EDM6|FLJ40263|MED
Description  collagen, type IX, alpha 1
See related  HGNC:2217|MIM:120210|Ensembl:ENSG00000112280|HPRD:00367|
Locus tag  RP1-138F4.2
Gene type  protein-coding
Map location  6q12-q14
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
LiteratureHigh-throughput literature-searchCo-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]Click to show detail
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
COL6A30.830.42
ITIH20.820.39
IGF20.820.39
NID20.810.69
LOXL20.790.69
COL1A10.780.46
COL4A10.760.64
NID10.760.63
ALX40.750.54
COL3A10.750.64
Top 10 negatively co-expressed genes
PIR-0.41-0.60
S100A1-0.39-0.63
HEPN1-0.39-0.53
AF347015.33-0.39-0.58
ACOT13-0.38-0.48
CSRP1-0.38-0.54
C5orf53-0.38-0.50
S100B-0.38-0.57
FXYD1-0.38-0.56
AF347015.27-0.38-0.57
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005201extracellular matrix structural constituentNAS-
GO:0008270zinc ion bindingIEA-
GO:0046872metal ion bindingIEA-
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0007155cell adhesionIEA-
GO:0009887organ morphogenesisTAS3473493 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005576extracellular regionIEA-
GO:0005578proteinaceous extracellular matrixIEA-
GO:0005594collagen type IXTAS9707347 
 
InteractionsShown by Network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
COL2A1ANFH | AOM | COL11A3 | MGC131516 | SEDCcollagen, type II, alpha 1Reconstituted ComplexBioGRID11724554 
MAGGMA | S-MAG | SIGLEC-4A | SIGLEC4Amyelin associated glycoprotein-HPRD,BioGRID2446864 
 
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-29481487m8hsa-miR-29aSZUAGCACCAUCUGAAAUCGGUU
hsa-miR-29bSZUAGCACCAUUUGAAAUCAGUGUU
hsa-miR-29cSZUAGCACCAUUUGAAAUCGGU
miR-97427491A,m8hsa-miR-9SZUCUUUGGUUAUCUAGCUGUAUGA
miR-96338344m8hsa-miR-96brainUUUGGCACUAGCACAUUUUUGC
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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