Gene Page

Gene Page: COL12A1

Summary

GeneID

1303

Symbol

COL12A1

Synonyms

BA209D8.1|COL12A1L|DJ234P15.1

Description

collagen, type XII, alpha 1

Locus tag

RP1-238D15.1

Gene type

protein-coding

Map location

6q12-q13

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Expression

P value: 1.735

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

AKR7A2

0.75

MMP28

0.75

0.76

CDK2AP2

0.75

0.78

CD81

0.74

0.77

TTYH1

0.74

0.68

DNASE2

0.72

0.69

MLC1

0.72

0.66

PHGDH

0.71

0.69

ABHD4

0.71

0.68

G6PC3

0.70

0.74

Top 10 negatively co-expressed genes

MYSM1

-0.42

-0.38

ANKRD12

-0.40

-0.39

RBM25

-0.39

-0.38

UPF2

-0.38

-0.41

RNMT

-0.37

-0.36

C10orf118

-0.37

-0.35

RTF1

-0.37

CCAR1

-0.37

-0.38

ANK3

-0.37

-0.32

PPP1R12A

-0.37

-0.39

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IEA

GO:0030020

extracellular matrix structural constituent conferring tensile strength

NAS

1427837

GO:0005198

structural molecule activity

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0001501

skeletal system development

TAS

3476925

GO:0007155

cell adhesion

IEA

GO:0030199

collagen fibril organization

NAS

1427837

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005576

extracellular region

IEA

GO:0005578

proteinaceous extracellular matrix

IEA

GO:0005595

collagen type XII

NAS

1427837

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
COL12A1	BA209D8.1 \| COL12A1L \| DJ234P15.1	collagen, type XII, alpha 1	-	HPRD,BioGRID	9143499

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-124.1	2158	2164	m8	hsa-miR-124a	UUAAGGCACGCGGUGAAUGCCA
miR-124/506	2158	2164	1A	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	2158	2164	1A	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-140	1883	1889	1A	hsa-miR-140^brain	AGUGGUUUUACCCUAUGGUAG
miR-15/16/195/424/497	21	27	m8	hsa-miR-15a^brain	UAGCAGCACAUAAUGGUUUGUG
				hsa-miR-16^brain	UAGCAGCACGUAAAUAUUGGCG
				hsa-miR-15b^brain	UAGCAGCACAUCAUGGUUUACA
				hsa-miR-195^SZ	UAGCAGCACAGAAAUAUUGGC
				hsa-miR-424	CAGCAGCAAUUCAUGUUUUGAA
				hsa-miR-497	CAGCAGCACACUGUGGUUUGU
miR-216	1073	1080	1A,m8	hsa-miR-216	UAAUCUCAGCUGGCAACUGUG
miR-25/32/92/363/367	944	950	m8	hsa-miR-25^brain	CAUUGCACUUGUCUCGGUCUGA
				hsa-miR-32	UAUUGCACAUUACUAAGUUGC
				hsa-miR-92	UAUUGCACUUGUCCCGGCCUG
				hsa-miR-367	AAUUGCACUUUAGCAAUGGUGA
				hsa-miR-92b^SZ	UAUUGCACUCGUCCCGGCCUC
miR-26	173	179	1A	hsa-miR-26a^brain	UUCAAGUAAUCCAGGAUAGGC
miR-26	173	179	1A	hsa-miR-26b^SZ	UUCAAGUAAUUCAGGAUAGGUU
miR-30-3p	2209	2216	1A,m8	hsa-miR-30a-3p	CUUUCAGUCGGAUGUUUGCAGC
miR-30-3p	2209	2216	1A,m8	hsa-miR-30e-3p	CUUUCAGUCGGAUGUUUACAGC
miR-338	963	969	1A	hsa-miR-338^brain	UCCAGCAUCAGUGAUUUUGUUGA
miR-34/449	2155	2161	m8	hsa-miR-34a^brain	UGGCAGUGUCUUAGCUGGUUGUU
				hsa-miR-34c	AGGCAGUGUAGUUAGCUGAUUGC
				hsa-miR-449	UGGCAGUGUAUUGUUAGCUGGU
				hsa-miR-449b	AGGCAGUGUAUUGUUAGCUGGC
miR-34b	2156	2162	m8	hsa-miR-34b	UAGGCAGUGUCAUUAGCUGAUUG
miR-376	2104	2110	1A	hsa-miR-376a	AUCAUAGAGGAAAAUCCACGU
miR-376	2104	2110	1A	hsa-miR-376b	AUCAUAGAGGAAAAUCCAUGUU
miR-381	2027	2033	1A	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-431	2098	2104	m8	hsa-miR-431	UGUCUUGCAGGCCGUCAUGCA
miR-505	1167	1173	1A	hsa-miR-505	GUCAACACUUGCUGGUUUCCUC
miR-9	622	628	m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.