Gene Page

Gene Page: COL19A1

Summary

GeneID

1310

Symbol

COL19A1

Synonyms

COL9A1L|D6S228E

Description

collagen, type XIX, alpha 1

Locus tag

RP1-138F4.1

Gene type

protein-coding

Map location

6q12-q13

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]

Click to show detail

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005201

extracellular matrix structural constituent

NAS

1639419 |7775380

GO:0030674

protein binding, bridging

NAS

1639419

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007519

skeletal muscle development

IEA

neuron (GO term level: 8)

GO:0001501

skeletal system development

TAS

9143499

GO:0007275

multicellular organismal development

IEA

GO:0016337

cell-cell adhesion

NAS

1639419

GO:0030154

cell differentiation

IEA

GO:0030198

extracellular matrix organization

NAS

1639419

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005576

extracellular region

IEA

GO:0005581

collagen

NAS

7775380

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
let-7/98	5013	5019	1A	hsa-let-7a^brain	UGAGGUAGUAGGUUGUAUAGUU
				hsa-let-7b^brain	UGAGGUAGUAGGUUGUGUGGUU
				hsa-let-7c^brain	UGAGGUAGUAGGUUGUAUGGUU
				hsa-let-7d^brain	AGAGGUAGUAGGUUGCAUAGU
				hsa-let-7e^brain	UGAGGUAGGAGGUUGUAUAGU
				hsa-let-7f^brain	UGAGGUAGUAGAUUGUAUAGUU
				hsa-miR-98^brain	UGAGGUAGUAAGUUGUAUUGUU
				hsa-let-7g^SZ	UGAGGUAGUAGUUUGUACAGU
				hsa-let-7i^brain	UGAGGUAGUAGUUUGUGCUGU
miR-130/301	3499	3505	m8	hsa-miR-130a^brain	CAGUGCAAUGUUAAAAGGGCAU
				hsa-miR-301	CAGUGCAAUAGUAUUGUCAAAGC
				hsa-miR-130b^brain	CAGUGCAAUGAUGAAAGGGCAU
				hsa-miR-454-3p	UAGUGCAAUAUUGCUUAUAGGGUUU
miR-137	5161	5167	1A	hsa-miR-137	UAUUGCUUAAGAAUACGCGUAG
miR-19	3498	3504	m8	hsa-miR-19a	UGUGCAAAUCUAUGCAAAACUGA
miR-19	3498	3504	m8	hsa-miR-19b	UGUGCAAAUCCAUGCAAAACUGA
miR-26	1978	1985	1A,m8	hsa-miR-26a^brain	UUCAAGUAAUCCAGGAUAGGC
miR-26	1978	1985	1A,m8	hsa-miR-26b^SZ	UUCAAGUAAUUCAGGAUAGGUU
miR-27	1519	1525	1A	hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
miR-27	1519	1525	1A	hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
miR-29	1898	1905	1A,m8	hsa-miR-29a^SZ	UAGCACCAUCUGAAAUCGGUU
				hsa-miR-29b^SZ	UAGCACCAUUUGAAAUCAGUGUU
				hsa-miR-29c^SZ	UAGCACCAUUUGAAAUCGGU
miR-505	1930	1936	1A	hsa-miR-505	GUCAACACUUGCUGGUUUCCUC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.