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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: LSM11

Summary

GeneID

134353

Symbol

LSM11

Synonyms

FLJ38273

Description

LSM11, U7 small nuclear RNA associated

Locus tag

Gene type

protein-coding

Map location

5q33.3

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_I

genome scan meta-analysis

Psr: 0.0032

GSMA_IIE

genome scan meta-analysis (European-ancestry samples)

Psr: 0.01718

GSMA_IIA

genome scan meta-analysis (All samples)

Psr: 0.00459

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003723

RNA binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006397

mRNA processing

IEA

GO:0008380

RNA splicing

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IEA

GO:0030529

ribonucleoprotein complex

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
LSM10	MGC15749 \| MST074 \| MSTP074	LSM10, U7 small nuclear RNA associated	-	HPRD	12975319
SMN1	BCD541 \| SMA \| SMA1 \| SMA2 \| SMA3 \| SMA4 \| SMA@ \| SMN \| SMNT \| T-BCD541	survival of motor neuron 1, telomeric	-	HPRD	12975319
SNRPB	COD \| SNRPB1 \| SmB/SmB' \| snRNP-B	small nuclear ribonucleoprotein polypeptides B and B1	-	HPRD	12975319
SNRPD1	HsT2456 \| SMD1 \| SNRPD	small nuclear ribonucleoprotein D1 polypeptide 16kDa	-	HPRD	12975319
SNRPD2	SMD2 \| SNRPD1	small nuclear ribonucleoprotein D2 polypeptide 16.5kDa	-	HPRD	12975319
ZNF473	HZFP100 \| ZN473	zinc finger protein 473	-	HPRD,BioGRID	12975319

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
let-7/98	1454	1461	1A,m8	hsa-let-7a^brain	UGAGGUAGUAGGUUGUAUAGUU
				hsa-let-7b^brain	UGAGGUAGUAGGUUGUGUGGUU
				hsa-let-7c^brain	UGAGGUAGUAGGUUGUAUGGUU
				hsa-let-7d^brain	AGAGGUAGUAGGUUGCAUAGU
				hsa-let-7e^brain	UGAGGUAGGAGGUUGUAUAGU
				hsa-let-7f^brain	UGAGGUAGUAGAUUGUAUAGUU
				hsa-miR-98^brain	UGAGGUAGUAAGUUGUAUUGUU
				hsa-let-7g^SZ	UGAGGUAGUAGUUUGUACAGU
				hsa-let-7i^brain	UGAGGUAGUAGUUUGUGCUGU
miR-132/212	1165	1172	1A,m8	hsa-miR-212^SZ	UAACAGUCUCCAGUCACGGCC
miR-132/212	1165	1172	1A,m8	hsa-miR-132^brain	UAACAGUCUACAGCCAUGGUCG
miR-26	1104	1111	1A,m8	hsa-miR-26a^brain	UUCAAGUAAUCCAGGAUAGGC
miR-26	1104	1111	1A,m8	hsa-miR-26b^SZ	UUCAAGUAAUUCAGGAUAGGUU
miR-29	759	766	1A,m8	hsa-miR-29a^SZ	UAGCACCAUCUGAAAUCGGUU
				hsa-miR-29b^SZ	UAGCACCAUUUGAAAUCAGUGUU
				hsa-miR-29c^SZ	UAGCACCAUUUGAAAUCGGU
miR-335	492	498	1A	hsa-miR-335^brain	UCAAGAGCAAUAACGAAAAAUGU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.