Gene Page

Gene Page: VTI1A

Summary

GeneID

143187

Symbol

VTI1A

Synonyms

MVti1|Vti1-rp2

Description

vesicle transport through interaction with t-SNAREs homolog 1A (yeast)

Locus tag

Gene type

protein-coding

Map location

10q25.2

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005484

SNAP receptor activity

IDA

15215310

GO:0008565

protein transporter activity

NAS

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006886

intracellular protein transport

IEA

GO:0016192

vesicle-mediated transport

NAS

GO:0042147

retrograde transport, endosome to Golgi

IDA

15215310

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0031201

SNARE complex

TAS

neuron, Synap (GO term level: 6)

15215310

GO:0016020

membrane

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
STX16	MGC90328 \| SYN16 \| hsyn16	syntaxin 16	-	HPRD	11839770
STX7	-	syntaxin 7	Affinity Capture-Western	BioGRID	11101518
STX8	CARB	syntaxin 8	Affinity Capture-Western	BioGRID	11101518
VAMP3	CEB	vesicle-associated membrane protein 3 (cellubrevin)	Affinity Capture-Western	BioGRID	11839770
VAMP4	VAMP24	vesicle-associated membrane protein 4	Affinity Capture-Western	BioGRID	11839770
VAMP8	EDB	vesicle-associated membrane protein 8 (endobrevin)	Affinity Capture-Western Co-purification	BioGRID	11101518

Pathway annotation

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-137	2598	2604	m8	hsa-miR-137	UAUUGCUUAAGAAUACGCGUAG
miR-15/16/195/424/497	3145	3151	m8	hsa-miR-15a^brain	UAGCAGCACAUAAUGGUUUGUG
				hsa-miR-16^brain	UAGCAGCACGUAAAUAUUGGCG
				hsa-miR-15b^brain	UAGCAGCACAUCAUGGUUUACA
				hsa-miR-195^SZ	UAGCAGCACAGAAAUAUUGGC
				hsa-miR-424	CAGCAGCAAUUCAUGUUUUGAA
				hsa-miR-497	CAGCAGCACACUGUGGUUUGU
miR-155	3337	3343	1A	hsa-miR-155	UUAAUGCUAAUCGUGAUAGGGG
miR-186	3089	3095	1A	hsa-miR-186	CAAAGAAUUCUCCUUUUGGGCUU
miR-19	3077	3084	1A,m8	hsa-miR-19a	UGUGCAAAUCUAUGCAAAACUGA
miR-19	3077	3084	1A,m8	hsa-miR-19b	UGUGCAAAUCCAUGCAAAACUGA
miR-200bc/429	3113	3119	m8	hsa-miR-200b	UAAUACUGCCUGGUAAUGAUGAC
				hsa-miR-200c	UAAUACUGCCGGGUAAUGAUGG
				hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
miR-203.1	3108	3114	1A	hsa-miR-203	UGAAAUGUUUAGGACCACUAG
miR-214	3143	3149	m8	hsa-miR-214^brain	ACAGCAGGCACAGACAGGCAG
miR-223	3190	3196	1A	hsa-miR-223	UGUCAGUUUGUCAAAUACCCC
miR-24	2794	2800	m8	hsa-miR-24^SZ	UGGCUCAGUUCAGCAGGAACAG
miR-326	3206	3212	m8	hsa-miR-326	CCUCUGGGCCCUUCCUCCAG
miR-330	2778	2784	m8	hsa-miR-330^brain	GCAAAGCACACGGCCUGCAGAGA
miR-375	2829	2835	1A	hsa-miR-375	UUUGUUCGUUCGGCUCGCGUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.