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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: GGA3

Summary

GeneID

23163

Symbol

GGA3

Synonyms

KIAA0154

Description

golgi associated, gamma adaptin ear containing, ARF binding protein 3

Locus tag

Gene type

protein-coding

Map location

17q25.1

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Expression

P value: 1.429

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

PPT1

0.76

0.74

DNAJA3

0.75

0.73

UBAP1

0.75

0.73

NIF3L1

0.74

0.69

PIGH

0.73

0.68

MRS2

0.73

0.68

TMEM55A

0.73

0.71

WIPI2

0.73

0.72

ADIPOR1

0.72

0.69

POLR2C

0.72

0.69

Top 10 negatively co-expressed genes

AF347015.18

-0.53

-0.33

AF347015.21

-0.51

-0.29

IL32

-0.49

-0.39

AC010300.1

-0.48

-0.46

AC100783.1

-0.46

-0.34

AL139819.3

-0.45

-0.38

AC098691.2

-0.43

-0.24

AF347015.8

-0.42

-0.25

FAM159B

-0.42

-0.46

MT-ATP8

-0.42

-0.25

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IPI

12505986

GO:0030306

ADP-ribosylation factor binding

IDA

10749927

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006886

intracellular protein transport

NAS

10749927

GO:0016192

vesicle-mediated transport

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005794

Golgi apparatus

IEA

GO:0005802

trans-Golgi network

IDA

10749927

GO:0005622

intracellular

IEA

GO:0005768

endosome

IEA

GO:0030117

membrane coat

IEA

GO:0016020

membrane

IEA

GO:0010008

endosome membrane

IEA

GO:0030131

clathrin adaptor complex

IEA

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
AFTPH	FLJ20080 \| FLJ23793 \| MGC33965 \| Nbla10388	aftiphilin	-	HPRD	14665628
AP1GBP1	MGC104959 \| SYNG	AP1 gamma subunit binding protein 1	-	HPRD	10814529
AP1S2	DC22 \| MGC:1902 \| MRX59 \| SIGMA1B	adaptor-related protein complex 1, sigma 2 subunit	-	HPRD	12215646
ARF1	-	ADP-ribosylation factor 1	-	HPRD,BioGRID	10747089
ARF3	-	ADP-ribosylation factor 3	Two-hybrid	BioGRID	12221117
CLTC	CHC \| CHC17 \| CLH-17 \| CLTCL2 \| Hc \| KIAA0034	clathrin, heavy chain (Hc)	-	HPRD,BioGRID	11301005
IGF2R	CD222 \| CIMPR \| M6P-R \| MPR1 \| MPRI	insulin-like growth factor 2 receptor	-	HPRD	11387475
M6PR	CD-MPR \| FLJ32994 \| MPR46 \| SMPR	mannose-6-phosphate receptor (cation dependent)	-	HPRD,BioGRID	11387475
RAB5A	RAB5	RAB5A, member RAS oncogene family	Two-hybrid	BioGRID	14665628
RABEP1	RAB5EP \| RABPT5	rabaptin, RAB GTPase binding effector protein 1	-	HPRD,BioGRID	12505986
TSG101	TSG10 \| VPS23	tumor susceptibility gene 101	-	HPRD,BioGRID	15039775

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
let-7/98	797	803	m8	hsa-let-7a^brain	UGAGGUAGUAGGUUGUAUAGUU
				hsa-let-7b^brain	UGAGGUAGUAGGUUGUGUGGUU
				hsa-let-7c^brain	UGAGGUAGUAGGUUGUAUGGUU
				hsa-let-7d^brain	AGAGGUAGUAGGUUGCAUAGU
				hsa-let-7e^brain	UGAGGUAGGAGGUUGUAUAGU
				hsa-let-7f^brain	UGAGGUAGUAGAUUGUAUAGUU
				hsa-miR-98^brain	UGAGGUAGUAAGUUGUAUUGUU
				hsa-let-7g^SZ	UGAGGUAGUAGUUUGUACAGU
				hsa-let-7i^brain	UGAGGUAGUAGUUUGUGCUGU
miR-103/107	1634	1640	1A	hsa-miR-103^brain	AGCAGCAUUGUACAGGGCUAUGA
miR-103/107	1634	1640	1A	hsa-miR-107^brain	AGCAGCAUUGUACAGGGCUAUCA
miR-15/16/195/424/497	153	159	m8	hsa-miR-15a^brain	UAGCAGCACAUAAUGGUUUGUG
				hsa-miR-16^brain	UAGCAGCACGUAAAUAUUGGCG
				hsa-miR-15b^brain	UAGCAGCACAUCAUGGUUUACA
				hsa-miR-195^SZ	UAGCAGCACAGAAAUAUUGGC
				hsa-miR-424	CAGCAGCAAUUCAUGUUUUGAA
				hsa-miR-497	CAGCAGCACACUGUGGUUUGU
miR-196	796	802	m8	hsa-miR-196a	UAGGUAGUUUCAUGUUGUUGG
miR-196	796	802	m8	hsa-miR-196b	UAGGUAGUUUCCUGUUGUUGG
miR-224	210	216	m8	hsa-miR-224	CAAGUCACUAGUGGUUCCGUUUA
miR-26	213	219	1A	hsa-miR-26a^brain	UUCAAGUAAUCCAGGAUAGGC
miR-26	213	219	1A	hsa-miR-26b^SZ	UUCAAGUAAUUCAGGAUAGGUU
miR-326	1462	1468	1A	hsa-miR-326	CCUCUGGGCCCUUCCUCCAG
miR-377	207	213	m8	hsa-miR-377	AUCACACAAAGGCAACUUUUGU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.