Gene Page

Gene Page: LPHN3

Summary

GeneID

23284

Symbol

LPHN3

Synonyms

CIRL3|LEC3

Description

latrophilin 3

See related

HGNC:20974|HPRD:10055|

Locus tag

Gene type

protein-coding

Map location

4q13.1

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

AC010522.1

0.60

0.50

RP11-274B21.1

0.58

0.55

AC018638.5

0.57

0.59

PVRIG

0.56

0.58

WNT7B

0.56

0.47

C19orf71

0.55

0.56

ZNF750

0.55

0.49

EPB41L4A

0.55

0.34

CRIPAK

0.55

0.57

CCDC57

0.55

Top 10 negatively co-expressed genes

SNX3

-0.42

-0.49

KBTBD3

-0.40

-0.51

CISD1

-0.40

-0.47

NDUFB5

-0.39

-0.54

CACYBP

-0.39

-0.48

CALM2

-0.39

-0.46

PHYH

-0.39

-0.37

HIGD1A

-0.39

-0.44

XRCC6BP1

-0.38

-0.40

RHEB

-0.38

-0.44

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0004872

receptor activity

IEA

GO:0005529

sugar binding

IEA

GO:0004930

G-protein coupled receptor activity

NAS

10994649

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007218

neuropeptide signaling pathway

IEA

Neurotransmitter (GO term level: 8)

GO:0007165

signal transduction

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0016021

integral to membrane

NAS

10994649

GO:0005886

plasma membrane

IEA

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-103/107	1139	1146	1A,m8	hsa-miR-103^brain	AGCAGCAUUGUACAGGGCUAUGA
miR-103/107	1139	1146	1A,m8	hsa-miR-107^brain	AGCAGCAUUGUACAGGGCUAUCA
miR-129-5p	1686	1692	1A	hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
				hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
				hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
				hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
miR-130/301	1980	1986	1A	hsa-miR-130a^brain	CAGUGCAAUGUUAAAAGGGCAU
				hsa-miR-301	CAGUGCAAUAGUAUUGUCAAAGC
				hsa-miR-130b^brain	CAGUGCAAUGAUGAAAGGGCAU
				hsa-miR-454-3p	UAGUGCAAUAUUGCUUAUAGGGUUU
miR-134	440	446	m8	hsa-miR-134^brain	UGUGACUGGUUGACCAGAGGG
miR-138	347	353	m8	hsa-miR-138^brain	AGCUGGUGUUGUGAAUC
				hsa-miR-138^brain	AGCUGGUGUUGUGAAUC
				hsa-miR-138^brain	AGCUGGUGUUGUGAAUC
miR-142-5p	1640	1647	1A,m8	hsa-miR-142-5p	CAUAAAGUAGAAAGCACUAC
miR-17-5p/20/93.mr/106/519.d	1639	1645	1A	hsa-miR-17-5p	CAAAGUGCUUACAGUGCAGGUAGU
				hsa-miR-20a^brain	UAAAGUGCUUAUAGUGCAGGUAG
				hsa-miR-106a	AAAAGUGCUUACAGUGCAGGUAGC
				hsa-miR-106b^SZ	UAAAGUGCUGACAGUGCAGAU
				hsa-miR-20b^SZ	CAAAGUGCUCAUAGUGCAGGUAG
				hsa-miR-519d	CAAAGUGCCUCCCUUUAGAGUGU
miR-182	582	588	1A	hsa-miR-182	UUUGGCAAUGGUAGAACUCACA
miR-192/215	900	906	m8	hsa-miR-192	CUGACCUAUGAAUUGACAGCC
				hsa-miR-215	AUGACCUAUGAAUUGACAGAC
				hsa-miR-192	CUGACCUAUGAAUUGACAGCC
				hsa-miR-215	AUGACCUAUGAAUUGACAGAC
miR-216	2261	2267	m8	hsa-miR-216	UAAUCUCAGCUGGCAACUGUG
miR-30-5p	565	571	m8	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-329	821	827	1A	hsa-miR-329^brain	AACACACCUGGUUAACCUCUUU
miR-331	909	916	1A,m8	hsa-miR-331^brain	GCCCCUGGGCCUAUCCUAGAA
miR-363	50	56	1A	hsa-miR-363	AUUGCACGGUAUCCAUCUGUAA
miR-376c	1387	1394	1A,m8	hsa-miR-376c	AACAUAGAGGAAAUUCCACG
miR-379	1519	1526	1A,m8	hsa-miR-379^brain	UGGUAGACUAUGGAACGUA
miR-450	1614	1620	1A	hsa-miR-450	UUUUUGCGAUGUGUUCCUAAUA
miR-455	2143	2149	1A	hsa-miR-455	UAUGUGCCUUUGGACUACAUCG
miR-493-5p	1395	1401	m8	hsa-miR-493-5p	UUGUACAUGGUAGGCUUUCAUU
miR-544	1364	1370	1A	hsa-miR-544	AUUCUGCAUUUUUAGCAAGU
miR-96	582	588	1A	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.