Gene Page

Gene Page: SLC44A1

Summary

GeneID

23446

Symbol

SLC44A1

Synonyms

CD92|CDW92|CHTL1|CTL1|RP11-287A8.1

Description

solute carrier family 44, member 1

Locus tag

Gene type

protein-coding

Map location

9q31.2

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 2

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0015220

choline transmembrane transporter activity

TAS

Neurotransmitter (GO term level: 6)

10677542

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0015871

choline transport

TAS

Neurotransmitter (GO term level: 6)

10677542

GO:0006810

transport

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0016020

membrane

IEA

GO:0016021

integral to membrane

TAS

10677542

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
CACNA1A	APCA \| CACNL1A4 \| CAV2.1 \| EA2 \| FHM \| HPCA \| MHP \| MHP1 \| SCA6	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	-	HPRD	15728831
CACNA1B	BIII \| CACNL1A5 \| CACNN \| Cav2.2	calcium channel, voltage-dependent, N type, alpha 1B subunit	-	HPRD	15728831
CACNA1C	CACH2 \| CACN2 \| CACNL1A1 \| CCHL1A1 \| CaV1.2 \| MGC120730 \| TS	calcium channel, voltage-dependent, L type, alpha 1C subunit	-	HPRD	15728831
GRM3	GLUR3 \| GPRC1C \| MGLUR3 \| mGlu3	glutamate receptor, metabotropic 3	-	HPRD	14663150
MAPK14	CSBP1 \| CSBP2 \| CSPB1 \| EXIP \| Mxi2 \| PRKM14 \| PRKM15 \| RK \| SAPK2A \| p38 \| p38ALPHA	mitogen-activated protein kinase 14	-	HPRD	9707433

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-1/206	30	37	1A,m8	hsa-miR-1	UGGAAUGUAAAGAAGUAUGUA
				hsa-miR-206^SZ	UGGAAUGUAAGGAAGUGUGUGG
				hsa-miR-613	AGGAAUGUUCCUUCUUUGCC
				hsa-miR-1	UGGAAUGUAAAGAAGUAUGUA
				hsa-miR-206^SZ	UGGAAUGUAAGGAAGUGUGUGG
				hsa-miR-613	AGGAAUGUUCCUUCUUUGCC
miR-103/107	1571	1577	1A	hsa-miR-103^brain	AGCAGCAUUGUACAGGGCUAUGA
miR-103/107	1571	1577	1A	hsa-miR-107^brain	AGCAGCAUUGUACAGGGCUAUCA
miR-130/301	1348	1355	1A,m8	hsa-miR-130a^brain	CAGUGCAAUGUUAAAAGGGCAU
				hsa-miR-301	CAGUGCAAUAGUAUUGUCAAAGC
				hsa-miR-130b^brain	CAGUGCAAUGAUGAAAGGGCAU
				hsa-miR-454-3p	UAGUGCAAUAUUGCUUAUAGGGUUU
miR-135	523	529	m8	hsa-miR-135a	UAUGGCUUUUUAUUCCUAUGUGA
miR-135	523	529	m8	hsa-miR-135b	UAUGGCUUUUCAUUCCUAUGUG
miR-153	703	709	1A	hsa-miR-153	UUGCAUAGUCACAAAAGUGA
miR-183	2291	2297	m8	hsa-miR-183	UAUGGCACUGGUAGAAUUCACUG
miR-186	1612	1618	1A	hsa-miR-186	CAAAGAAUUCUCCUUUUGGGCUU
miR-208	271	277	1A	hsa-miR-208	AUAAGACGAGCAAAAAGCUUGU
miR-25/32/92/363/367	1698	1704	1A	hsa-miR-25^brain	CAUUGCACUUGUCUCGGUCUGA
				hsa-miR-32	UAUUGCACAUUACUAAGUUGC
				hsa-miR-92	UAUUGCACUUGUCCCGGCCUG
				hsa-miR-367	AAUUGCACUUUAGCAAUGGUGA
				hsa-miR-92b^SZ	UAUUGCACUCGUCCCGGCCUC
miR-339	162	168	1A	hsa-miR-339	UCCCUGUCCUCCAGGAGCUCA
miR-342	1933	1939	1A	hsa-miR-342^brain	UCUCACACAGAAAUCGCACCCGUC
miR-381	2274	2280	1A	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-410	2299	2305	1A	hsa-miR-410	AAUAUAACACAGAUGGCCUGU
miR-448	703	709	1A	hsa-miR-448	UUGCAUAUGUAGGAUGUCCCAU
miR-485-5p	1392	1398	1A	hsa-miR-485-5p	AGAGGCUGGCCGUGAUGAAUUC
miR-495	1272	1278	1A	hsa-miR-495^brain	AAACAAACAUGGUGCACUUCUUU
miR-495	1272	1278	1A	hsa-miR-495^brain	AAACAAACAUGGUGCACUUCUUU
miR-496	1309	1315	1A	hsa-miR-496	AUUACAUGGCCAAUCUC
miR-499	271	277	1A	hsa-miR-499	UUAAGACUUGCAGUGAUGUUUAA
miR-543	282	288	1A	hsa-miR-543	AAACAUUCGCGGUGCACUUCU
miR-99/100	217	223	m8	hsa-miR-99a^brain	AACCCGUAGAUCCGAUCUUGUG
				hsa-miR-100^brain	AACCCGUAGAUCCGAACUUGUG
				hsa-miR-99b^brain	CACCCGUAGAACCGACCUUGCG

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.