Gene Page

Gene Page: RBM9

Summary

GeneID

23543

Symbol

RBM9

Synonyms

FOX2|Fox-2|HNRBP2|HRNBP2|RTA|dJ106I20.3|fxh

Description

RNA binding motif protein 9

Locus tag

Gene type

protein-coding

Map location

22q13.1

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Association

A combined odds ratio method (Sun et al. 2008), association studies

Link to SZGene

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0000166

nucleotide binding

IEA

GO:0003714

transcription corepressor activity

IDA

11875103

GO:0003723

RNA binding

IDA

11875103

GO:0008134

transcription factor binding

IDA

11875103

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006397

mRNA processing

IEA

GO:0030520

estrogen receptor signaling pathway

IDA

11875103

GO:0008380

RNA splicing

IEA

GO:0016070

RNA metabolic process

TAS

11875103

GO:0016481

negative regulation of transcription

IDA

11875103

GO:0042127

regulation of cell proliferation

TAS

11875103

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IDA

11875103

GO:0005737

cytoplasm

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
DAZAP2	KIAA0058 \| MGC14319 \| MGC766 \| PRTB	DAZ associated protein 2	Two-hybrid	BioGRID	16189514
DMRTB1	-	DMRT-like family B with proline-rich C-terminal, 1	Two-hybrid	BioGRID	16189514
ESR1	DKFZp686N23123 \| ER \| ESR \| ESRA \| Era \| NR3A1	estrogen receptor 1	-	HPRD,BioGRID	11875103
ESR2	ER-BETA \| ESR-BETA \| ESRB \| ESTRB \| Erb \| NR3A2	estrogen receptor 2 (ER beta)	-	HPRD,BioGRID	11875103
RBPMS	HERMES	RNA binding protein with multiple splicing	Two-hybrid	BioGRID	16189514
RHOXF2	PEPP-2 \| PEPP2 \| THG1	Rhox homeobox family, member 2	Two-hybrid	BioGRID	16189514

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
let-7/98	145	151	1A	hsa-let-7a^brain	UGAGGUAGUAGGUUGUAUAGUU
				hsa-let-7b^brain	UGAGGUAGUAGGUUGUGUGGUU
				hsa-let-7c^brain	UGAGGUAGUAGGUUGUAUGGUU
				hsa-let-7d^brain	AGAGGUAGUAGGUUGCAUAGU
				hsa-let-7e^brain	UGAGGUAGGAGGUUGUAUAGU
				hsa-let-7f^brain	UGAGGUAGUAGAUUGUAUAGUU
				hsa-miR-98^brain	UGAGGUAGUAAGUUGUAUUGUU
				hsa-let-7g^SZ	UGAGGUAGUAGUUUGUACAGU
				hsa-let-7i^brain	UGAGGUAGUAGUUUGUGCUGU
miR-129-5p	4425	4431	m8	hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
miR-129-5p	4425	4431	m8	hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
miR-130/301	3708	3714	m8	hsa-miR-130a^brain	CAGUGCAAUGUUAAAAGGGCAU
				hsa-miR-301	CAGUGCAAUAGUAUUGUCAAAGC
				hsa-miR-130b^brain	CAGUGCAAUGAUGAAAGGGCAU
				hsa-miR-454-3p	UAGUGCAAUAUUGCUUAUAGGGUUU
miR-135	1187	1194	1A,m8	hsa-miR-135a	UAUGGCUUUUUAUUCCUAUGUGA
miR-135	1187	1194	1A,m8	hsa-miR-135b	UAUGGCUUUUCAUUCCUAUGUG
miR-139	4216	4222	m8	hsa-miR-139^brain	UCUACAGUGCACGUGUCU
miR-148/152	3709	3715	m8	hsa-miR-148a	UCAGUGCACUACAGAACUUUGU
				hsa-miR-152^brain	UCAGUGCAUGACAGAACUUGGG
				hsa-miR-148b	UCAGUGCAUCACAGAACUUUGU
miR-15/16/195/424/497	1645	1651	1A	hsa-miR-15a^brain	UAGCAGCACAUAAUGGUUUGUG
				hsa-miR-16^brain	UAGCAGCACGUAAAUAUUGGCG
				hsa-miR-15b^brain	UAGCAGCACAUCAUGGUUUACA
				hsa-miR-195^SZ	UAGCAGCACAGAAAUAUUGGC
				hsa-miR-424	CAGCAGCAAUUCAUGUUUUGAA
				hsa-miR-497	CAGCAGCACACUGUGGUUUGU
miR-186	197	203	m8	hsa-miR-186	CAAAGAAUUCUCCUUUUGGGCUU
miR-19	3707	3713	m8	hsa-miR-19a	UGUGCAAAUCUAUGCAAAACUGA
miR-19	3707	3713	m8	hsa-miR-19b	UGUGCAAAUCCAUGCAAAACUGA
miR-200bc/429	4629	4635	m8	hsa-miR-200b	UAAUACUGCCUGGUAAUGAUGAC
				hsa-miR-200c	UAAUACUGCCGGGUAAUGAUGG
				hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
				hsa-miR-200b	UAAUACUGCCUGGUAAUGAUGAC
				hsa-miR-200c	UAAUACUGCCGGGUAAUGAUGG
				hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
miR-204/211	4429	4435	m8	hsa-miR-204^brain	UUCCCUUUGUCAUCCUAUGCCU
				hsa-miR-211	UUCCCUUUGUCAUCCUUCGCCU
				hsa-miR-204^brain	UUCCCUUUGUCAUCCUAUGCCU
				hsa-miR-211	UUCCCUUUGUCAUCCUUCGCCU
miR-205	1555	1561	m8	hsa-miR-205	UCCUUCAUUCCACCGGAGUCUG
miR-25/32/92/363/367	47	53	1A	hsa-miR-25^brain	CAUUGCACUUGUCUCGGUCUGA
				hsa-miR-32	UAUUGCACAUUACUAAGUUGC
				hsa-miR-92	UAUUGCACUUGUCCCGGCCUG
				hsa-miR-367	AAUUGCACUUUAGCAAUGGUGA
				hsa-miR-92b^SZ	UAUUGCACUCGUCCCGGCCUC
miR-326	5145	5151	1A	hsa-miR-326	CCUCUGGGCCCUUCCUCCAG
miR-331	4492	4498	m8	hsa-miR-331^brain	GCCCCUGGGCCUAUCCUAGAA
miR-335	3789	3796	1A,m8	hsa-miR-335^brain	UCAAGAGCAAUAACGAAAAAUGU
miR-365	1560	1566	1A	hsa-miR-365	UAAUGCCCCUAAAAAUCCUUAU
miR-378	4238	4244	1A	hsa-miR-378	CUCCUGACUCCAGGUCCUGUGU
miR-381	5210	5216	1A	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-384	3724	3730	1A	hsa-miR-384	AUUCCUAGAAAUUGUUCAUA
miR-410	4674	4680	1A	hsa-miR-410	AAUAUAACACAGAUGGCCUGU
miR-421	32	38	m8	hsa-miR-421	GGCCUCAUUAAAUGUUUGUUG
miR-450	4425	4431	1A	hsa-miR-450	UUUUUGCGAUGUGUUCCUAAUA
miR-503	1645	1651	1A	hsa-miR-503	UAGCAGCGGGAACAGUUCUGCAG
miR-504	5121	5127	m8	hsa-miR-504	AGACCCUGGUCUGCACUCUAU
miR-9	208	214	1A	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA
miR-9	208	214	1A	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.