Gene Page

Gene Page: RABGAP1

Summary

GeneID

23637

Symbol

RABGAP1

Synonyms

DKFZp586D2123|GAPCENA|RP11-123N4.2|TBC1D11

Description

RAB GTPase activating protein 1

Locus tag

Gene type

protein-coding

Map location

9q33.2

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Network

Shortest path distance of core genes in the Human protein-protein interaction network

Contribution to shortest path in PPI network: 0.0833

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005097

Rab GTPase activator activity

IEA

GO:0005096

GTPase activator activity

TAS

10202141

GO:0015631

tubulin binding

TAS

10202141

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007049

cell cycle

TAS

10202141

GO:0032313

regulation of Rab GTPase activity

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005813

centrosome

TAS

10202141

GO:0005829

cytosol

TAS

10202141

GO:0005875

microtubule associated complex

TAS

10202141

GO:0005622

intracellular

IEA

GO:0005737

cytoplasm

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
RAB6A	RAB6 \| RAB6A' \| RAB6B	RAB6A, member RAS oncogene family	Two-hybrid	BioGRID	11071909
RAB6B	-	RAB6B, member RAS oncogene family	-	HPRD	10893188

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-141/200a	828	834	m8	hsa-miR-141	UAACACUGUCUGGUAAAGAUGG
miR-141/200a	828	834	m8	hsa-miR-200a	UAACACUGUCUGGUAACGAUGU
miR-153	622	629	1A,m8	hsa-miR-153	UUGCAUAGUCACAAAAGUGA
miR-17-5p/20/93.mr/106/519.d	511	517	m8	hsa-miR-17-5p	CAAAGUGCUUACAGUGCAGGUAGU
				hsa-miR-20a^brain	UAAAGUGCUUAUAGUGCAGGUAG
				hsa-miR-106a	AAAAGUGCUUACAGUGCAGGUAGC
				hsa-miR-106b^SZ	UAAAGUGCUGACAGUGCAGAU
				hsa-miR-20b^SZ	CAAAGUGCUCAUAGUGCAGGUAG
				hsa-miR-519d	CAAAGUGCCUCCCUUUAGAGUGU
miR-18	1197	1203	m8	hsa-miR-18a	UAAGGUGCAUCUAGUGCAGAUA
miR-18	1197	1203	m8	hsa-miR-18b	UAAGGUGCAUCUAGUGCAGUUA
miR-182	663	669	1A	hsa-miR-182	UUUGGCAAUGGUAGAACUCACA
miR-192/215	132	138	m8	hsa-miR-192	CUGACCUAUGAAUUGACAGCC
miR-192/215	132	138	m8	hsa-miR-215	AUGACCUAUGAAUUGACAGAC
miR-329	778	784	1A	hsa-miR-329^brain	AACACACCUGGUUAACCUCUUU
miR-377	66	72	m8	hsa-miR-377	AUCACACAAAGGCAACUUUUGU
miR-448	623	629	1A	hsa-miR-448	UUGCAUAUGUAGGAUGUCCCAU
miR-93.hd/291-3p/294/295/302/372/373/520	510	516	m8	hsa-miR-93^brain	AAAGUGCUGUUCGUGCAGGUAG
				hsa-miR-302a	UAAGUGCUUCCAUGUUUUGGUGA
				hsa-miR-302b	UAAGUGCUUCCAUGUUUUAGUAG
				hsa-miR-302c	UAAGUGCUUCCAUGUUUCAGUGG
				hsa-miR-302d	UAAGUGCUUCCAUGUUUGAGUGU
				hsa-miR-372	AAAGUGCUGCGACAUUUGAGCGU
				hsa-miR-373	GAAGUGCUUCGAUUUUGGGGUGU
				hsa-miR-520e	AAAGUGCUUCCUUUUUGAGGG
				hsa-miR-520a	AAAGUGCUUCCCUUUGGACUGU
				hsa-miR-520b	AAAGUGCUUCCUUUUAGAGGG
				hsa-miR-520c	AAAGUGCUUCCUUUUAGAGGGUU
				hsa-miR-520d	AAAGUGCUUCUCUUUGGUGGGUU
miR-96	663	669	1A	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.