| | | Two-hybrid | BioGRID | 10219089 |
| ABCD4 | ABC41 | EST352188 | P70R | P79R | PMP69 | PXMP1L | ATP-binding cassette, sub-family D (ALD), member 4 | Two-hybrid | BioGRID | 16169070 |
| ABL1 | ABL | JTK7 | bcr/abl | c-ABL | p150 | v-abl | c-abl oncogene 1, receptor tyrosine kinase | - | HPRD,BioGRID | 9798959 |
| ACD | PIP1 | PTOP | TINT1 | TPP1 | adrenocortical dysplasia homolog (mouse) | Two-hybrid | BioGRID | 16169070 |
| APEX1 | APE | APE-1 | APE1 | APEN | APEX | APX | HAP1 | REF-1 | REF1 | APEX nuclease (multifunctional DNA repair enzyme) 1 | - | HPRD | 8621488 |
| AR | AIS | DHTR | HUMARA | KD | NR3C4 | SBMA | SMAX1 | TFM | androgen receptor | Affinity Capture-Western | BioGRID | 15640154 |
| ARAP1 | CENTD2 | KIAA0782 | ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 | Two-hybrid | BioGRID | 16169070 |
| ATP6V1E1 | ATP6E | ATP6E2 | ATP6V1E | P31 | Vma4 | ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 | Two-hybrid | BioGRID | 16169070 |
| BARD1 | - | BRCA1 associated RING domain 1 | BARD1 interacts with XRCC6 (Ku70). | BIND | 15782130 |
| BIN1 | AMPH2 | AMPHL | DKFZp547F068 | MGC10367 | SH3P9 | bridging integrator 1 | Co-purification | BioGRID | 17671430 |
| C9orf46 | AD025 | FLJ14688 | FLJ39176 | MDS030 | chromosome 9 open reading frame 46 | Two-hybrid | BioGRID | 16169070 |
| CBX5 | HP1 | HP1A | chromobox homolog 5 (HP1 alpha homolog, Drosophila) | Ku70 interacts with HP1-alpha. | BIND | 11112778 |
| - | HPRD,BioGRID | 11112778 |
| CCNA1 | - | cyclin A1 | cyclin A1 interacts with Ku70. | BIND | 15159402 |
| Two-hybrid | BioGRID | 15159402 |
| CD40 | Bp50 | CDW40 | MGC9013 | TNFRSF5 | p50 | CD40 molecule, TNF receptor superfamily member 5 | - | HPRD,BioGRID | 10514012 |
| CDCA5 | MGC16386 | SORORIN | cell division cycle associated 5 | Two-hybrid | BioGRID | 16169070 |
| CDK2 | p33(CDK2) | cyclin-dependent kinase 2 | Biochemical Activity | BioGRID | 15159402 |
| CHEK1 | CHK1 | CHK1 checkpoint homolog (S. pombe) | - | HPRD,BioGRID | 12756247 |
| CLU | AAG4 | APOJ | CLI | KUB1 | MGC24903 | SGP-2 | SGP2 | SP-40 | TRPM-2 | TRPM2 | clusterin | - | HPRD,BioGRID | 10219089 |
| CLU interacts with G22P1 (Ku70). | BIND | 12551933 |
| CREBBP | CBP | KAT3A | RSTS | CREB binding protein | Reconstituted Complex Two-hybrid | BioGRID | 9488450 |
| DLX2 | TES-1 | TES1 | distal-less homeobox 2 | Reconstituted Complex | BioGRID | 11279128 |
| DNTT | TDT | deoxynucleotidyltransferase, terminal | - | HPRD,BioGRID | 10570175 |
| EGFR | ERBB | ERBB1 | HER1 | PIG61 | mENA | epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian) | - | HPRD | 9430697 |
| FMNL1 | C17orf1 | C17orf1B | FHOD4 | FMNL | KW-13 | MGC133052 | MGC1894 | MGC21878 | formin-like 1 | Two-hybrid | BioGRID | 16169070 |
| GAL3ST4 | FLJ12116 | GAL3ST-4 | galactose-3-O-sulfotransferase 4 | Two-hybrid | BioGRID | 16169070 |
| HOXC4 | HOX3 | HOX3E | cp19 | homeobox C4 | - | HPRD,BioGRID | 11279128 |
| HOXD4 | HHO.C13 | HOX-5.1 | HOX4 | HOX4B | Hox-4.2 | homeobox D4 | Reconstituted Complex | BioGRID | 11279128 |
| HSF1 | HSTF1 | heat shock transcription factor 1 | - | HPRD,BioGRID | 11162511 |
| ILVBL | 209L8 | AHAS | FLJ39061 | ILV2H | MGC1269 | MGC19535 | ilvB (bacterial acetolactate synthase)-like | Two-hybrid | BioGRID | 16169070 |
| KAT2A | GCN5 | GCN5L2 | MGC102791 | PCAF-b | hGCN5 | K(lysine) acetyltransferase 2A | - | HPRD,BioGRID | 9488450 |
| KIAA0182 | GSE1 | KIAA0182 | Two-hybrid | BioGRID | 16169070 |
| MAPK8 | JNK | JNK1 | JNK1A2 | JNK21B1/2 | PRKM8 | SAPK1 | mitogen-activated protein kinase 8 | - | HPRD | 11749722 |
| MRE11A | ATLD | HNGS1 | MRE11 | MRE11B | MRE11 meiotic recombination 11 homolog A (S. cerevisiae) | - | HPRD,BioGRID | 10508516 |
| NCF4 | MGC3810 | NCF | P40PHOX | SH3PXD4 | neutrophil cytosolic factor 4, 40kDa | - | HPRD,BioGRID | 9914162 |
| NCOA6 | AIB3 | ANTP | ASC2 | HOX1.1 | HOXA7 | KIAA0181 | NRC | PRIP | RAP250 | TRBP | nuclear receptor coactivator 6 | Affinity Capture-MS Reconstituted Complex | BioGRID | 10823961 |12519782
|
| NHP2L1 | 15.5K | FA-1 | FA1 | NHPX | OTK27 | SNU13 | SPAG12 | SSFA1 | NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) | Two-hybrid | BioGRID | 16169070 |
| NIT1 | MGC57670 | nitrilase 1 | Two-hybrid | BioGRID | 16169070 |
| NOTCH1 | TAN1 | hN1 | Notch homolog 1, translocation-associated (Drosophila) | Two-hybrid | BioGRID | 16169070 |
| PAEP | GD | GdA | GdF | GdS | MGC138509 | MGC142288 | PAEG | PEP | PP14 | progestagen-associated endometrial protein | Two-hybrid | BioGRID | 16169070 |
| PAFAH1B3 | - | platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit 29kDa | Two-hybrid | BioGRID | 16169070 |
| PCNA | MGC8367 | proliferating cell nuclear antigen | - | HPRD,BioGRID | 11239001 |12171929
|
| PECAM1 | CD31 | PECAM-1 | platelet/endothelial cell adhesion molecule | Two-hybrid | BioGRID | 16169070 |
| PGAM1 | PGAM-B | PGAMA | phosphoglycerate mutase 1 (brain) | Two-hybrid | BioGRID | 16169070 |
| POU2F1 | OCT1 | OTF1 | POU class 2 homeobox 1 | Affinity Capture-Western | BioGRID | 11279128 |
| - | HPRD | 12672812 |
| POU2F2 | OCT2 | OTF2 | Oct-2 | POU class 2 homeobox 2 | Reconstituted Complex Two-hybrid | BioGRID | 11279128 |
| PRKDC | DNA-PKcs | DNAPK | DNPK1 | HYRC | HYRC1 | XRCC7 | p350 | protein kinase, DNA-activated, catalytic polypeptide | - | HPRD | 9312071 |10446239 |11279128 |
Affinity Capture-Western in vitro in vivo | BioGRID | 10064605 |10446239
|
| PTTG1 | EAP1 | HPTTG | MGC126883 | MGC138276 | PTTG | TUTR1 | pituitary tumor-transforming 1 | - | HPRD,BioGRID | 11238996 |
| RBBP4 | NURF55 | RBAP48 | retinoblastoma binding protein 4 | Two-hybrid | BioGRID | 16169070 |
| RPA2 | REPA2 | RPA32 | replication protein A2, 32kDa | Affinity Capture-Western | BioGRID | 10064605 |
| RPLP1 | FLJ27448 | MGC5215 | P1 | RPP1 | ribosomal protein, large, P1 | Two-hybrid | BioGRID | 16169070 |
| RRAS2 | TC21 | related RAS viral (r-ras) oncogene homolog 2 | Two-hybrid | BioGRID | 16169070 |
| SERPINB9 | CAP-3 | CAP3 | PI9 | serpin peptidase inhibitor, clade B (ovalbumin), member 9 | Two-hybrid | BioGRID | 16169070 |
| SNTA1 | SNT1 | TACIP1 | dJ1187J4.5 | syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component) | Two-hybrid | BioGRID | 16169070 |
| TAL1 | SCL | TCL5 | bHLHa17 | tal-1 | T-cell acute lymphocytic leukemia 1 | Affinity Capture-MS | BioGRID | 16407974 |
| TBCD | KIAA0988 | tubulin folding cofactor D | Two-hybrid | BioGRID | 16169070 |
| TERF2 | TRBF2 | TRF2 | telomeric repeat binding factor 2 | - | HPRD,BioGRID | 10984620 |11112778
|
| TERF2IP | DRIP5 | RAP1 | telomeric repeat binding factor 2, interacting protein | Affinity Capture-MS | BioGRID | 15100233 |
| TERT | EST2 | TCS1 | TP2 | TRT | hEST2 | telomerase reverse transcriptase | - | HPRD,BioGRID | 12377759 |
| TP53 | FLJ92943 | LFS1 | TRP53 | p53 | tumor protein p53 | TP53 (p53) interacts with XRCC6 (Ku70). | BIND | 15782130 |
| VAV1 | VAV | vav 1 guanine nucleotide exchange factor | - | HPRD,BioGRID | 8524317 |
| WRN | DKFZp686C2056 | RECQ3 | RECQL2 | RECQL3 | Werner syndrome | WRN interacts with G22P1 (Ku70) as part of a complex. | BIND | 14734561 |
| - | HPRD,BioGRID | 12177300 |
| XRCC5 | FLJ39089 | KARP-1 | KARP1 | KU80 | KUB2 | Ku86 | NFIV | X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) | Affinity Capture-Western Co-fractionation in vitro in vivo Reconstituted Complex Two-hybrid | BioGRID | 9488450 |10207052 |10219089 |10446239 |10984620 |
| Ku70 interacts with Ku80 | BIND | 11493912 |
| - | HPRD | 10207052 |10446239
|
| XRCC6BP1 | KUB3 | MGC134817 | MGC134818 | XRCC6 binding protein 1 | - | HPRD,BioGRID | 10219089 |
| YWHAZ | KCIP-1 | MGC111427 | MGC126532 | MGC138156 | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide | Two-hybrid | BioGRID | 16169070 |