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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

Gene Ranking Integration

Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: CHMP2B

Summary

GeneID

25978

Symbol

CHMP2B

Synonyms

CHMP2.5|DKFZp564O123|DMT1|VPS2-2|VPS2B

Description

chromatin modifying protein 2B

Locus tag

Gene type

protein-coding

Map location

3p11.2

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_IIE

genome scan meta-analysis (European-ancestry samples)

Psr: 0.04359

GSMA_IIA

genome scan meta-analysis (All samples)

Psr: 0.04047

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

ROGDI

0.87

0.86

FBXW5

0.86

PHKG2

0.85

0.87

NPDC1

0.85

0.86

RPUSD3

0.85

0.87

MFSD3

0.85

0.86

FBXO44

0.85

0.83

FBXL15

0.84

0.87

ABHD8

0.84

0.85

C21orf2

0.84

0.86

Top 10 negatively co-expressed genes

AF347015.18

-0.48

-0.27

MT-ATP8

-0.47

-0.28

AL139819.3

-0.43

-0.38

AF347015.21

-0.43

-0.22

AF347015.8

-0.42

-0.22

EIF5B

-0.41

-0.48

NSBP1

-0.41

-0.36

SEC62

-0.40

-0.42

AF347015.2

-0.40

-0.20

AF347015.26

-0.39

-0.20

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0019904

protein domain specific binding

IPI

17928862

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0015031

protein transport

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005622

intracellular

IDA

11256614

GO:0005737

cytoplasm

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
ATP5C1	ATP5C \| ATP5CL1	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	Two-hybrid	BioGRID	16169070
TRAF2	MGC:45012 \| TRAP \| TRAP3	TNF receptor-associated factor 2	Two-hybrid	BioGRID	16189514
VHL	HRCA1 \| RCA1 \| VHL1	von Hippel-Lindau tumor suppressor	Affinity Capture-MS	BioGRID	17353931

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-124.1	598	605	1A,m8	hsa-miR-124a	UUAAGGCACGCGGUGAAUGCCA
miR-124/506	598	604	1A	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	598	604	1A	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-30-5p	1594	1601	1A,m8	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-409-3p	559	565	m8	hsa-miR-409-3p	CGAAUGUUGCUCGGUGAACCCCU
miR-9	162	168	1A	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.