Gene Page: LASS2

Summary
GeneID  29956
Symbol  LASS2
Synonyms  CerS2|FLJ10243|L3|MGC987|SP260|TMSG1
Description  LAG1 homolog, ceramide synthase 2
See related  HGNC:14076|MIM:606920|Ensembl:ENSG00000143418|HPRD:06080|
Locus tag  -
Gene type  protein-coding
Map location  1q21.2
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_Igenome scan meta-analysisPsr: 0.0235 
GSMA_IIAgenome scan meta-analysis (All samples)Psr: 0.00814 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
Top 10 negatively co-expressed genes
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0003700transcription factor activityIEA-
GO:0005515protein bindingIPI11543633 |17353931 
GO:0043565sequence-specific DNA bindingIEA-
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0006355regulation of transcription, DNA-dependentIEA-
GO:0008610lipid biosynthetic processIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005789endoplasmic reticulum membraneIEA-
GO:0005634nucleusIEA-
GO:0005783endoplasmic reticulumIEA-
GO:0016020membraneIEA-
GO:0016021integral to membraneIEA-
GO:0031965nuclear membraneIEA-
 
InteractionsShown by Network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
ASGR1ASGPR | CLEC4H1 | Hs.12056asialoglycoprotein receptor 1-HPRD,BioGRID11543633 
ASGR2ASGP-R | CLEC4H2 | Hs.1259 | L-H2asialoglycoprotein receptor 2-HPRD,BioGRID11543633 
ATP6V0CATP6C | ATP6L | ATPL | VATL | Vma3ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c-HPRD,BioGRID11543633 
NDNHsT16328 | PWCRnecdin homolog (mouse)Affinity Capture-MSBioGRID17353931 
SLC22A1HOCT1 | OCT1 | oct1_cdssolute carrier family 22 (organic cation transporter), member 1-HPRD,BioGRID11543633 
 
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-101831837m8hsa-miR-101UACAGUACUGUGAUAACUGAAG
miR-124.1381387m8hsa-miR-124aUUAAGGCACGCGGUGAAUGCCA
miR-124/5063803871A,m8hsa-miR-506UAAGGCACCCUUCUGAGUAGA
hsa-miR-124brainUAAGGCACGCGGUGAAUGCC
miR-132/2128338391Ahsa-miR-212SZUAACAGUCUCCAGUCACGGCC
hsa-miR-132brainUAACAGUCUACAGCCAUGGUCG
miR-133810816m8hsa-miR-133aUUGGUCCCCUUCAACCAGCUGU
hsa-miR-133bUUGGUCCCCUUCAACCAGCUA
hsa-miR-133aUUGGUCCCCUUCAACCAGCUGU
hsa-miR-133bUUGGUCCCCUUCAACCAGCUA
miR-1824124181Ahsa-miR-182UUUGGCAAUGGUAGAACUCACA
miR-34b647653m8hsa-miR-34bUAGGCAGUGUCAUUAGCUGAUUG
miR-964124181Ahsa-miR-96brainUUUGGCACUAGCACAUUUUUGC
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


Copyright © Bioinformatics and Systems Medicine Laboratory All Rights Reserved since 2009.