Gene Page: NDST1

Summary
GeneID  3340
Symbol  NDST1
Synonyms  HSST|NST1
Description  N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
See related  HGNC:7680|MIM:600853|Ensembl:ENSG00000070614|HPRD:02912|
Locus tag  -
Gene type  protein-coding
Map location  5q33.1
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_Igenome scan meta-analysisPsr: 0.0032 
GSMA_IIAgenome scan meta-analysis (All samples)Psr: 0.00459 
GSMA_IIEgenome scan meta-analysis (European-ancestry samples)Psr: 0.01718 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
DGKB0.840.74
KCNAB10.830.72
WSCD20.820.78
ANO30.810.69
PPP3CA0.800.70
SCN4B0.780.67
ACVR1C0.780.64
ST8SIA30.780.67
PPP1R16B0.780.75
GPR1580.780.70
Top 10 negatively co-expressed genes
BCL7C-0.40-0.59
HEBP2-0.37-0.63
SH2B2-0.36-0.49
RPL36-0.36-0.51
CCDC28B-0.36-0.50
RPL12-0.36-0.47
RPL35-0.35-0.49
TRAF4-0.35-0.50
ALKBH2-0.35-0.35
RPS18-0.35-0.49
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0016787hydrolase activityIEA-
GO:0016740transferase activityIEA-
GO:0008146sulfotransferase activityIEA-
GO:0015016[heparan sulfate]-glucosamine N-sulfotransferase activityIEA-
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0006954inflammatory responseIEA-
GO:0015012heparan sulfate proteoglycan biosynthetic processTAS9915799 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0000139Golgi membraneIEA-
GO:0005794Golgi apparatusIEA-
GO:0016020membraneIEA-
GO:0016021integral to membraneIEA-
 
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-1/206188918951Ahsa-miR-1UGGAAUGUAAAGAAGUAUGUA
hsa-miR-206SZUGGAAUGUAAGGAAGUGUGUGG
hsa-miR-613AGGAAUGUUCCUUCUUUGCC
miR-124/50619301936m8hsa-miR-506UAAGGCACCCUUCUGAGUAGA
hsa-miR-124brainUAAGGCACGCGGUGAAUGCC
miR-1289961002m8hsa-miR-128aUCACAGUGAACCGGUCUCUUUU
hsa-miR-128bUCACAGUGAACCGGUCUCUUUC
hsa-miR-128aUCACAGUGAACCGGUCUCUUUU
hsa-miR-128bUCACAGUGAACCGGUCUCUUUC
miR-1371111171Ahsa-miR-137UAUUGCUUAAGAAUACGCGUAG
miR-148/15240584064m8hsa-miR-148aUCAGUGCACUACAGAACUUUGU
hsa-miR-152brainUCAGUGCAUGACAGAACUUGGG
hsa-miR-148bUCAGUGCAUCACAGAACUUUGU
miR-14960671A,m8hsa-miR-149brainUCUGGCUCCGUGUCUUCACUCC
hsa-miR-149brainUCUGGCUCCGUGUCUUCACUCC
hsa-miR-149brainUCUGGCUCCGUGUCUUCACUCC
miR-191231237m8hsa-miR-191brainCAACGGAAUCCCAAAAGCAGCU
miR-199406040661Ahsa-miR-199aCCCAGUGUUCAGACUACCUGUUC
hsa-miR-199bCCCAGUGUUUAGACUAUCUGUUC
miR-200bc/429367373m8hsa-miR-200bUAAUACUGCCUGGUAAUGAUGAC
hsa-miR-200cUAAUACUGCCGGGUAAUGAUGG
hsa-miR-429UAAUACUGUCUGGUAAAACCGU
miR-23153715441A,m8hsa-miR-23abrainAUCACAUUGCCAGGGAUUUCC
hsa-miR-23bbrainAUCACAUUGCCAGGGAUUACC
miR-2458651A,m8hsa-miR-24SZUGGCUCAGUUCAGCAGGAACAG
miR-29140114081A,m8hsa-miR-29aSZUAGCACCAUCUGAAAUCGGUU
hsa-miR-29bSZUAGCACCAUUUGAAAUCAGUGUU
hsa-miR-29cSZUAGCACCAUUUGAAAUCGGU
miR-299-3p36443650m8hsa-miR-299-3pUAUGUGGGAUGGUAAACCGCUU
miR-323153715431Ahsa-miR-323brainGCACAUUACACGGUCGACCUCU
miR-34/449158315891Ahsa-miR-34abrainUGGCAGUGUCUUAGCUGGUUGUU
hsa-miR-34cAGGCAGUGUAGUUAGCUGAUUGC
hsa-miR-449UGGCAGUGUAUUGUUAGCUGGU
hsa-miR-449bAGGCAGUGUAUUGUUAGCUGGC
miR-37645784584m8hsa-miR-376aAUCAUAGAGGAAAAUCCACGU
hsa-miR-376bAUCAUAGAGGAAAAUCCAUGUU
miR-410100210091A,m8hsa-miR-410AAUAUAACACAGAUGGCCUGU
miR-493-5p483348401A,m8hsa-miR-493-5pUUGUACAUGGUAGGCUUUCAUU
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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