Gene Page: PCDHGC3

Summary
GeneID  5098
Symbol  PCDHGC3
Synonyms  PC43|PCDH-GAMMA-C3|PCDH2
Description  protocadherin gamma subfamily C, 3
See related  HGNC:8716|MIM:603627|Ensembl:ENSG00000081853|HPRD:04693|
Locus tag  -
Gene type  protein-coding
Map location  5q31
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_Igenome scan meta-analysisPsr: 0.0032 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
GZF10.820.81
ACAP20.820.80
VPS4B0.810.81
ACBD50.810.77
USP80.810.76
ZHX30.800.79
BCL2L130.800.78
STAT30.800.78
PPFIA10.790.78
RAB5B0.790.79
Top 10 negatively co-expressed genes
AF347015.21-0.57-0.43
IL32-0.57-0.51
C1orf54-0.49-0.43
MT-CO2-0.49-0.40
AF347015.31-0.48-0.41
HIGD1B-0.48-0.40
CSAG1-0.47-0.41
FAM159B-0.47-0.38
AL050337.1-0.46-0.36
GNG11-0.46-0.38
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005509calcium ion bindingIEA-
GO:0005515protein bindingIEA-
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0007155cell adhesionIEA-
GO:0007156homophilic cell adhesionIEA-
GO:0016339calcium-dependent cell-cell adhesionNAS8508762 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005624membrane fractionIEA-
GO:0005737cytoplasmIDA18029348 
GO:0016021integral to membraneIEA-
GO:0005886plasma membraneIEA-
 
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-133119412011A,m8hsa-miR-133aUUGGUCCCCUUCAACCAGCUGU
hsa-miR-133bUUGGUCCCCUUCAACCAGCUA
miR-1359039091Ahsa-miR-135aUAUGGCUUUUUAUUCCUAUGUGA
hsa-miR-135bUAUGGCUUUUCAUUCCUAUGUG
miR-1531911971Ahsa-miR-153UUGCAUAGUCACAAAAGUGA
miR-4481901971A,m8hsa-miR-448UUGCAUAUGUAGGAUGUCCCAU
miR-73173231Ahsa-miR-7SZUGGAAGACUAGUGAUUUUGUUG
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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