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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: NOVA1

Summary

GeneID

4857

Symbol

NOVA1

Synonyms

Nova-1

Description

neuro-oncological ventral antigen 1

Locus tag

Gene type

protein-coding

Map location

14q

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_I

genome scan meta-analysis

Psr: 0.047

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003729

mRNA binding

IEA

GO:0005515

protein binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007268

synaptic transmission

TAS

neuron, Synap, Neurotransmitter (GO term level: 6)

8558240

GO:0000398

nuclear mRNA splicing, via spliceosome

IEA

GO:0008380

RNA splicing

TAS

8398153

GO:0007626

locomotory behavior

TAS

8558240

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IEA

GO:0005730

nucleolus

IDA

18029348

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
ZHOU_INFLAMMATORY_RESPONSE_FIMA_UP	544	308	All SZGR genes in this pathway
KOYAMA_SEMA3B_TARGETS_UP	292	168	All SZGR genes in this pathway
KOYAMA_SEMA3B_TARGETS_DN	411	249	All SZGR genes in this pathway
ACEVEDO_LIVER_CANCER_WITH_H3K9ME3_UP	141	75	All SZGR genes in this pathway
SMID_BREAST_CANCER_LUMINAL_B_UP	172	109	All SZGR genes in this pathway
SMID_BREAST_CANCER_BASAL_DN	701	446	All SZGR genes in this pathway
BASSO_HAIRY_CELL_LEUKEMIA_DN	80	66	All SZGR genes in this pathway
BOQUEST_STEM_CELL_UP	260	174	All SZGR genes in this pathway
BOQUEST_STEM_CELL_CULTURED_VS_FRESH_UP	425	298	All SZGR genes in this pathway
NAKAMURA_ADIPOGENESIS_LATE_UP	104	67	All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_30MIN_DN	150	99	All SZGR genes in this pathway
BRUINS_UVC_RESPONSE_LATE	1137	655	All SZGR genes in this pathway
IKEDA_MIR30_TARGETS_UP	116	87	All SZGR genes in this pathway
RATTENBACHER_BOUND_BY_CELF1	467	251	All SZGR genes in this pathway
DURAND_STROMA_S_UP	297	194	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
let-7/98	1423	1429	m8	hsa-let-7a^brain	UGAGGUAGUAGGUUGUAUAGUU
				hsa-let-7b^brain	UGAGGUAGUAGGUUGUGUGGUU
				hsa-let-7c^brain	UGAGGUAGUAGGUUGUAUGGUU
				hsa-let-7d^brain	AGAGGUAGUAGGUUGCAUAGU
				hsa-let-7e^brain	UGAGGUAGGAGGUUGUAUAGU
				hsa-let-7f^brain	UGAGGUAGUAGAUUGUAUAGUU
				hsa-miR-98^brain	UGAGGUAGUAAGUUGUAUUGUU
				hsa-let-7g^SZ	UGAGGUAGUAGUUUGUACAGU
				hsa-let-7i^brain	UGAGGUAGUAGUUUGUGCUGU
miR-101	61	68	1A,m8	hsa-miR-101	UACAGUACUGUGAUAACUGAAG
miR-103/107	631	638	1A,m8	hsa-miR-103^brain	AGCAGCAUUGUACAGGGCUAUGA
miR-103/107	631	638	1A,m8	hsa-miR-107^brain	AGCAGCAUUGUACAGGGCUAUCA
miR-128	1610	1616	1A	hsa-miR-128a	UCACAGUGAACCGGUCUCUUUU
				hsa-miR-128b	UCACAGUGAACCGGUCUCUUUC
				hsa-miR-128a	UCACAGUGAACCGGUCUCUUUU
				hsa-miR-128b	UCACAGUGAACCGGUCUCUUUC
miR-132/212	362	368	1A	hsa-miR-212^SZ	UAACAGUCUCCAGUCACGGCC
				hsa-miR-132^brain	UAACAGUCUACAGCCAUGGUCG
				hsa-miR-212^SZ	UAACAGUCUCCAGUCACGGCC
				hsa-miR-132^brain	UAACAGUCUACAGCCAUGGUCG
miR-137	506	513	1A,m8	hsa-miR-137	UAUUGCUUAAGAAUACGCGUAG
miR-138	274	280	1A	hsa-miR-138^brain	AGCUGGUGUUGUGAAUC
miR-143	1475	1481	1A	hsa-miR-143^brain	UGAGAUGAAGCACUGUAGCUCA
miR-144	62	68	1A	hsa-miR-144	UACAGUAUAGAUGAUGUACUAG
miR-146	1834	1840	m8	hsa-miR-146a	UGAGAACUGAAUUCCAUGGGUU
				hsa-miR-146b^brain	UGAGAACUGAAUUCCAUAGGCU
				hsa-miR-146a	UGAGAACUGAAUUCCAUGGGUU
				hsa-miR-146b^brain	UGAGAACUGAAUUCCAUAGGCU
miR-148/152	733	739	1A	hsa-miR-148a	UCAGUGCACUACAGAACUUUGU
				hsa-miR-152^brain	UCAGUGCAUGACAGAACUUGGG
				hsa-miR-148b	UCAGUGCAUCACAGAACUUUGU
miR-153	108	114	1A	hsa-miR-153	UUGCAUAGUCACAAAAGUGA
miR-155	277	283	m8	hsa-miR-155	UUAAUGCUAAUCGUGAUAGGGG
miR-181	299	306	1A,m8	hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
				hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
miR-188	310	316	1A	hsa-miR-188	CAUCCCUUGCAUGGUGGAGGGU
miR-193	763	770	1A,m8	hsa-miR-193a	AACUGGCCUACAAAGUCCCAG
miR-193	763	770	1A,m8	hsa-miR-193b	AACUGGCCCUCAAAGUCCCGCUUU
miR-200bc/429	1128	1134	m8	hsa-miR-200b	UAAUACUGCCUGGUAAUGAUGAC
				hsa-miR-200c	UAAUACUGCCGGGUAAUGAUGG
				hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
miR-203.1	1212	1218	1A	hsa-miR-203	UGAAAUGUUUAGGACCACUAG
miR-203.1	1212	1218	1A	hsa-miR-203	UGAAAUGUUUAGGACCACUAG
miR-204/211	1874	1881	1A,m8	hsa-miR-204^brain	UUCCCUUUGUCAUCCUAUGCCU
miR-204/211	1874	1881	1A,m8	hsa-miR-211	UUCCCUUUGUCAUCCUUCGCCU
miR-208	1389	1395	1A	hsa-miR-208	AUAAGACGAGCAAAAAGCUUGU
miR-217	1384	1390	m8	hsa-miR-217	UACUGCAUCAGGAACUGAUUGGAU
miR-221/222	2066	2073	1A,m8	hsa-miR-221^brain	AGCUACAUUGUCUGCUGGGUUUC
miR-221/222	2066	2073	1A,m8	hsa-miR-222^brain	AGCUACAUCUGGCUACUGGGUCUC
miR-25/32/92/363/367	1687	1693	m8	hsa-miR-25^brain	CAUUGCACUUGUCUCGGUCUGA
				hsa-miR-32	UAUUGCACAUUACUAAGUUGC
				hsa-miR-92	UAUUGCACUUGUCCCGGCCUG
				hsa-miR-367	AAUUGCACUUUAGCAAUGGUGA
				hsa-miR-92b^SZ	UAUUGCACUCGUCCCGGCCUC
miR-26	1713	1719	1A	hsa-miR-26a^brain	UUCAAGUAAUCCAGGAUAGGC
miR-26	1713	1719	1A	hsa-miR-26b^SZ	UUCAAGUAAUUCAGGAUAGGUU
miR-27	1610	1616	m8	hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
				hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
				hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
				hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
miR-30-5p	577	583	1A	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-338	1416	1422	m8	hsa-miR-338^brain	UCCAGCAUCAGUGAUUUUGUUGA
miR-338	1416	1422	m8	hsa-miR-338^brain	UCCAGCAUCAGUGAUUUUGUUGA
miR-339	307	314	1A,m8	hsa-miR-339	UCCCUGUCCUCCAGGAGCUCA
miR-361	879	885	1A	hsa-miR-361^brain	UUAUCAGAAUCUCCAGGGGUAC
miR-369-3p	2021	2027	1A	hsa-miR-369-3p	AAUAAUACAUGGUUGAUCUUU
miR-374	2021	2027	m8	hsa-miR-374	UUAUAAUACAACCUGAUAAGUG
miR-374	2021	2027	m8	hsa-miR-374	UUAUAAUACAACCUGAUAAGUG
miR-384	459	465	1A	hsa-miR-384	AUUCCUAGAAAUUGUUCAUA
miR-433-3p	1626	1632	1A	hsa-miR-433^brain	AUCAUGAUGGGCUCCUCGGUGU
miR-448	108	114	1A	hsa-miR-448	UUGCAUAUGUAGGAUGUCCCAU
miR-485-5p	1596	1602	m8	hsa-miR-485-5p	AGAGGCUGGCCGUGAUGAAUUC
miR-494	169	176	1A,m8	hsa-miR-494^brain	UGAAACAUACACGGGAAACCUCUU
miR-494	169	176	1A,m8	hsa-miR-494^brain	UGAAACAUACACGGGAAACCUCUU
miR-495	950	956	1A	hsa-miR-495^brain	AAACAAACAUGGUGCACUUCUUU
miR-496	144	150	1A	hsa-miR-496	AUUACAUGGCCAAUCUC
miR-499	1388	1395	1A,m8	hsa-miR-499	UUAAGACUUGCAGUGAUGUUUAA
miR-542-3p	1249	1255	m8	hsa-miR-542-3p	UGUGACAGAUUGAUAACUGAAA
miR-544	72	78	m8	hsa-miR-544	AUUCUGCAUUUUUAGCAAGU
miR-96	858	864	m8	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC
miR-96	858	864	m8	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.