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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

Gene Ranking Integration

Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: NPHP1

Summary

GeneID

4867

Symbol

NPHP1

Synonyms

FLJ97602|JBTS4|NPH1|SLSN1

Description

nephronophthisis 1 (juvenile)

See related

HGNC:7905|MIM:607100|Ensembl:ENSG00000144061|HPRD:02019|HPRD:09524|

Locus tag

-

Gene type

protein-coding

Map location

2q13

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

genome scan meta-analysis

Psr: 0.0004

genome scan meta-analysis (All samples)

Psr: 0.00755

Expression

P value: 2.538

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

LARS

0.92

0.91

GTPBP4

0.92

0.92

GGNBP2

0.91

0.91

IMMT

0.91

0.90

PLAA

0.91

0.90

CUL2

0.91

0.88

CUL3

0.91

0.90

GPBP1

0.91

0.91

STRBP

0.91

0.91

VPS45

0.91

0.91

Top 10 negatively co-expressed genes

MT-CO2

-0.81

-0.81

AF347015.31

-0.80

-0.82

AF347015.33

-0.80

-0.81

AF347015.8

-0.80

-0.81

AF347015.27

-0.78

-0.79

FXYD1

-0.77

-0.82

AF347015.2

-0.77

-0.79

AF347015.21

-0.77

-0.78

MT-CYB

-0.77

-0.78

AF347015.15

-0.76

-0.79

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

protein binding

IPI

structural molecule activity

NAS

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

signal transduction

NAS

visual behavior

NAS

excretion

TAS

cell-cell adhesion

NAS

actin cytoskeleton organization

NAS

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

membrane

NAS

cell junction

IEA

-

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
BCAR1	CAS \| CAS1 \| CASS1 \| CRKAS \| P130Cas	breast cancer anti-estrogen resistance 1	-	HPRD,BioGRID	10739664 \|11493697
FLNA	ABP-280 \| ABPX \| DKFZp434P031 \| FLN \| FLN1 \| FMD \| MNS \| NHBP \| OPD \| OPD1 \| OPD2	filamin A, alpha (actin binding protein 280)	-	HPRD,BioGRID	12006559
FLNB	ABP-278 \| AOI \| DKFZp686A1668 \| DKFZp686O033 \| FH1 \| FLN1L \| LRS1 \| SCT \| TABP \| TAP	filamin B, beta (actin binding protein 278)	-	HPRD,BioGRID	12006559
FLNC	ABP-280 \| ABP280A \| ABPA \| ABPL \| FLJ10186 \| FLN2	filamin C, gamma (actin binding protein 280)	-	HPRD	12006559
INVS	INV \| KIAA0573 \| MGC133080 \| MGC133081 \| NPH2 \| NPHP2	inversin	-	HPRD,BioGRID	12872123
NPHP1	FLJ97602 \| JBTS4 \| NPH1 \| SLSN1	nephronophthisis 1 (juvenile)	-	HPRD,BioGRID	12006559
NPHP3	DKFZp667K242 \| DKFZp781K1312 \| FLJ30691 \| FLJ36696 \| KIAA2000 \| MGC78666 \| NPH3	nephronophthisis 3 (adolescent)	-	HPRD,BioGRID	12872122
NPHP4	KIAA0673 \| SLSN4	nephronophthisis 4	-	HPRD,BioGRID	12244321
PTK2B	CADTK \| CAKB \| FADK2 \| FAK2 \| FRNK \| PKB \| PTK \| PYK2 \| RAFTK	PTK2B protein tyrosine kinase 2 beta	-	HPRD,BioGRID	11493697
TNS1	DKFZp586K0617 \| MGC88584 \| MST091 \| MST122 \| MST127 \| MSTP122 \| MSTP127 \| MXRA6 \| TNS	tensin 1	-	HPRD,BioGRID	11493697
TUBB	M40 \| MGC117247 \| MGC16435 \| OK/SW-cl.56 \| TUBB1 \| TUBB5	tubulin, beta	Affinity Capture-Western	BioGRID	12872123
TUBB2A	TUBB \| TUBB2 \| dJ40E16.7	tubulin, beta 2A	-	HPRD	12872123

Pathway annotation

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