Gene Page: LSM8

Summary
GeneID  51691
Symbol  LSM8
Synonyms  YJR022W
Description  LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)
See related  HGNC:20471|MIM:607288|Ensembl:ENSG00000128534|HPRD:06288|
Locus tag  -
Gene type  protein-coding
Map location  7q31.1-q31.3
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
NetworkShortest path distance of core genes in the Human protein-protein interaction networkContribution to shortest path in PPI network: 15.5 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
Top 10 negatively co-expressed genes
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0003723RNA bindingIEA-
GO:0005515protein bindingIPI15231747 
GO:0017070U6 snRNA bindingNAS10523320 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0000398nuclear mRNA splicing, via spliceosomeNAS-
GO:0008380RNA splicingIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005634nucleusNAS-
GO:0030529ribonucleoprotein complexIEA-
 
Protein-protein InteractionsShown by network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
COL23A1DKFZp434K0621collagen, type XXIII, alpha 1Two-hybridBioGRID15231747 
DBF4ASK | CHIF | DBF4A | ZDBF1DBF4 homolog (S. cerevisiae)Two-hybridBioGRID15231747 
DCP1AFLJ21691 | HSA275986 | Nbla00360 | SMAD4IP1 | SMIFDCP1 decapping enzyme homolog A (S. cerevisiae)Two-hybridBioGRID15231747 
EXOSC6EAP4 | MTR3 | Mtr3p | hMtr3p | p11exosome component 6Two-hybridBioGRID15231747 
FAM63AFLJ11280 | FLJ43504 | RP11-316M1.5family with sequence similarity 63, member A-HPRD,BioGRID15231747 
FERMT3KIND3 | MGC10966 | MIG-2 | MIG2B | UNC112C | URP2 | URP2SFfermitin family homolog 3 (Drosophila)-HPRD,BioGRID15231747 
GTF2IBAP-135 | BAP135 | BTKAP1 | DIWS | FLJ38776 | FLJ56355 | IB291 | SPIN | TFII-I | WBS | WBSCR6general transcription factor II, i-HPRD,BioGRID15231747 
IGHMBP2CATF1 | FLJ34220 | FLJ41171 | HCSA | HMN6 | SMARD1 | SMUBP2immunoglobulin mu binding protein 2-HPRD,BioGRID15231747 
IL28RACRF2/12 | IFNLR | IFNLR1 | IL-28R1 | LICR2interleukin 28 receptor, alpha (interferon, lambda receptor)-HPRD,BioGRID15231747 
ISOC2FLJ18582isochorismatase domain containing 2-HPRD,BioGRID15231747 
ITSN2KIAA1256 | PRO2015 | SH3D1B | SH3P18 | SWA | SWAPintersectin 2-HPRD,BioGRID15231747 
KCTD3MGC43935 | NY-REN-45potassium channel tetramerisation domain containing 3Two-hybridBioGRID15231747 
LSM2C6orf28 | G7b | YBL026W | snRNPLSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)-HPRD11920408 |15231747 
Two-hybridBioGRID14667819 |15231747 
LSM3SMX4 | USS2 | YLR438CLSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)-HPRD11920408 
LSM4YER112WLSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)-HPRD,BioGRID11920408 
LSM5FLJ12710 | YER146WLSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)-HPRD11920408 
LSM6YDR378CLSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)-HPRD11920408 
LSM7YNL147WLSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)-HPRD11920408 
MTHFR-5,10-methylenetetrahydrofolate reductase (NADPH)-HPRD,BioGRID15231747 
NAGKGNK | HSA242910N-acetylglucosamine kinase-HPRD,BioGRID15231747 
PDCD2MGC12347 | RP8 | ZMYND7programmed cell death 2-HPRD,BioGRID15231747 
PGD6PGDphosphogluconate dehydrogenase-HPRD,BioGRID15231747 
SEPT5CDCREL | CDCREL-1 | CDCREL1 | H5 | PNUTL1septin 5-HPRD,BioGRID15231747 
SNRPD1HsT2456 | SMD1 | SNRPDsmall nuclear ribonucleoprotein D1 polypeptide 16kDa-HPRD,BioGRID15231747 
TALDO1TAL | TAL-H | TALDOR | TALHtransaldolase 1-HPRD,BioGRID15231747 
THUMPD3DKFZp434F091THUMP domain containing 3Two-hybridBioGRID15231747 
UPF1FLJ43809 | FLJ46894 | HUPF1 | KIAA0221 | NORF1 | RENT1 | pNORF1UPF1 regulator of nonsense transcripts homolog (yeast)-HPRD,BioGRID15231747 
 


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