Gene Page: POLR2D

Summary
GeneID  5433
Symbol  POLR2D
Synonyms  HSRBP4|HSRPB4|RBP4
Description  polymerase (RNA) II (DNA directed) polypeptide D
See related  HGNC:9191|MIM:606017|Ensembl:ENSG00000144231|HPRD:16191|
Locus tag  -
Gene type  protein-coding
Map location  2q21
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_Igenome scan meta-analysisPsr: 0.023 
GSMA_IIAgenome scan meta-analysis (All samples)Psr: 0.00755 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
LRP40.860.79
SLC4A40.850.75
PREX20.850.75
ATP13A40.850.70
ACSS30.850.76
ATP1A20.840.78
ALDH6A10.840.80
KANK10.830.76
SLC1A20.830.75
ITPR20.830.70
Top 10 negatively co-expressed genes
MED19-0.45-0.47
AC011491.1-0.43-0.46
NR2C2AP-0.43-0.47
RAB33A-0.42-0.45
POLB-0.41-0.44
NPM3-0.41-0.43
DCTPP1-0.41-0.44
TBC1D7-0.41-0.41
STMN1-0.41-0.40
DCTN3-0.40-0.43
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0000166nucleotide bindingIEA-
GO:0003824catalytic activityIEA-
GO:0003899DNA-directed RNA polymerase activityIMP9528765 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0000398nuclear mRNA splicing, via spliceosomeEXP12226669 
GO:0006367transcription initiation from RNA polymerase II promoterEXP8946909 
GO:0006368RNA elongation from RNA polymerase II promoterEXP9405375 
GO:0006350transcriptionIEA-
GO:0044237cellular metabolic processIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005634nucleusIEA-
GO:0005654nucleoplasmEXP1939271 |2449431 |8946909 
|9409616 |9512541 
|9790902 |12676794 
GO:0005665DNA-directed RNA polymerase II, core complexIDA9528765 
 
Protein-protein InteractionsShown by network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
ATF7IPFLJ10139 | FLJ10688 | MCAF | p621activating transcription factor 7 interacting protein-HPRD10777215 
IRF1IRF-1 | MARinterferon regulatory factor 1Rbp4 interacts with IRF-1 promoter.BIND15893730 
Rbp4 interacts with IRF-1.BIND15893730 
MED10L6 | MGC5309 | NUT2 | TRG20mediator complex subunit 10Affinity Capture-MSBioGRID15175163 
MED19DT2P1G7 | LCMR1mediator complex subunit 19Affinity Capture-MSBioGRID15175163 
MED26CRSP7 | CRSP70mediator complex subunit 26Affinity Capture-MSBioGRID15175163 
MED281500003D12Rik | DKFZp434N185 | EG1 | magicinmediator complex subunit 28Affinity Capture-MSBioGRID15175163 
MED29DKFZp434H247 | IXLmediator complex subunit 29Affinity Capture-MSBioGRID15175163 
MED9FLJ10193 | MED25 | MGC138234mediator complex subunit 9Affinity Capture-MSBioGRID15175163 
POLR2AMGC75453 | POLR2 | POLRA | RPB1 | RPBh1 | RPO2 | RPOL2 | RpIILS | hRPB220 | hsRPB1polymerase (RNA) II (DNA directed) polypeptide A, 220kDahRPB4 interacts with hRPB1.BIND10567706 
POLR2BPOL2RB | RPB2 | hRPB140 | hsRPB2polymerase (RNA) II (DNA directed) polypeptide B, 140kDahRPB4 interacts with hRPB2.BIND10567706 
POLR2CRPB3 | RPB31 | hRPB33 | hsRPB3polymerase (RNA) II (DNA directed) polypeptide C, 33kDahRPB4 interacts with hRPB3.BIND10567706 
POLR2DHSRBP4 | HSRPB4 | RBP4polymerase (RNA) II (DNA directed) polypeptide DhRPB4 interacts weakly with hRPB4.BIND10567706 
POLR2ERPABC1 | RPB5 | XAP4 | hRPB25 | hsRPB5polymerase (RNA) II (DNA directed) polypeptide E, 25kDahRPB4 interacts weakly with hRPB5.BIND10567706 
POLR2GMGC138367 | MGC138369 | RPB7 | hRPB19 | hsRPB7polymerase (RNA) II (DNA directed) polypeptide G-HPRD9528765 
hRPB4 interacts with hRPB7.BIND10567706 
POLR2HRPABC3 | RPB17 | RPB8 | hsRPB8polymerase (RNA) II (DNA directed) polypeptide HhRPB4 interacts weakly with hRPB8.BIND10567706 
POLR2KABC10-alpha | RPABC4 | RPB10alpha | RPB12 | RPB7.0 | hRPB7.0 | hsRPB10apolymerase (RNA) II (DNA directed) polypeptide K, 7.0kDahRPB4 interacts weakly with hRPB10-alpha.BIND10567706 
POLR2LRBP10 | RPABC5 | RPB10 | RPB10beta | RPB7.6 | hRPB7.6 | hsRPB10bpolymerase (RNA) II (DNA directed) polypeptide L, 7.6kDahRPB4 interacts with hRPB10-beta.BIND10567706 
XRCC5FLJ39089 | KARP-1 | KARP1 | KU80 | KUB2 | Ku86 | NFIVX-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)Affinity Capture-WesternBioGRID12393188 
 
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-182104710531Ahsa-miR-182UUUGGCAAUGGUAGAACUCACA
miR-18312581264m8hsa-miR-183UAUGGCACUGGUAGAAUUCACUG
miR-96104610531A,m8hsa-miR-96brainUUUGGCACUAGCACAUUUUUGC
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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