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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: ANKHD1

Summary

GeneID

54882

Symbol

ANKHD1

Synonyms

MASK|VBARP

Description

ankyrin repeat and KH domain containing 1

Locus tag

Gene type

protein-coding

Map location

5q31.3

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_I

genome scan meta-analysis

Psr: 0.0032

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenic, schizophrenia]

Click to show detail

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

PTOV1

0.96

0.94

SLC25A1

0.93

0.89

WRAP53

0.93

0.92

LRRC61

0.93

0.92

PGLS

0.92

0.93

APH1A

0.92

0.91

SPNS1

0.92

0.91

MOSPD3

0.92

FPGS

0.92

C8orf82

0.91

0.90

Top 10 negatively co-expressed genes

AF347015.27

-0.67

-0.83

C5orf53

-0.66

-0.72

AF347015.33

-0.65

-0.81

MT-CO2

-0.64

-0.80

HLA-F

-0.63

-0.67

AF347015.8

-0.63

-0.82

AF347015.31

-0.63

-0.78

MT-CYB

-0.63

-0.81

AF347015.15

-0.61

-0.80

S100B

-0.61

-0.72

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003723

RNA binding

IEA

GO:0005515

protein binding

IPI

12812986

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005737

cytoplasm

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
DISC1	C1orf136 \| FLJ13381 \| FLJ21640 \| FLJ25311 \| FLJ41105 \| KIAA0457 \| SCZD9	disrupted in schizophrenia 1	DISC-1 interacts with APAP2.	BIND	12812986
GRINL1A	DKFZp586F1918	glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A	Two-hybrid	BioGRID	16169070
NFKBIE	IKBE	nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	-	HPRD	14743216

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-221/222	373	379	m8	hsa-miR-221^brain	AGCUACAUUGUCUGCUGGGUUUC
miR-221/222	373	379	m8	hsa-miR-222^brain	AGCUACAUCUGGCUACUGGGUCUC
miR-23	387	394	1A,m8	hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
miR-23	387	394	1A,m8	hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
miR-30-5p	312	319	1A,m8	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-323	73	79	m8	hsa-miR-323^brain	GCACAUUACACGGUCGACCUCU
miR-323	73	79	m8	hsa-miR-323^brain	GCACAUUACACGGUCGACCUCU
miR-494	274	281	1A,m8	hsa-miR-494^brain	UGAAACAUACACGGGAAACCUCUU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.