Gene Page: BRF2

Summary
GeneID  55290
Symbol  BRF2
Synonyms  BRFU|FLJ11052|TFIIIB50
Description  BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like
See related  HGNC:17298|MIM:607013|Ensembl:ENSG00000104221|HPRD:06115|
Locus tag  -
Gene type  protein-coding
Map location  8p12
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
NetworkShortest path distance of core genes in the Human protein-protein interaction networkContribution to shortest path in PPI network: 0.0131 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
Top 10 negatively co-expressed genes
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005515protein bindingIPI17353931 
GO:0008270zinc ion bindingIEA-
GO:0030528transcription regulator activityIEA-
GO:0046872metal ion bindingIEA-
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0006355regulation of transcription, DNA-dependentIEA-
GO:0006352transcription initiationIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005634nucleusIEA-
GO:0005667transcription factor complexIEA-
 
Protein-protein InteractionsShown by network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
ABCD3ABC43 | PMP70 | PXMP1ATP-binding cassette, sub-family D (ALD), member 3Affinity Capture-MSBioGRID17353931 
AIFM1AIF | MGC111425 | PDCD8apoptosis-inducing factor, mitochondrion-associated, 1Affinity Capture-MSBioGRID17353931 
ATAD3AFLJ10709ATPase family, AAA domain containing 3AAffinity Capture-MSBioGRID17353931 
COPGCOPG1 | FLJ21068coatomer protein complex, subunit gammaAffinity Capture-MSBioGRID17353931 
DPM1CDGIE | MPDSdolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunitAffinity Capture-MSBioGRID17353931 
FANCIFLJ10719 | KIAA1794Fanconi anemia, complementation group IAffinity Capture-MSBioGRID17353931 
GCN1L1GCN1 | GCN1L | KIAA0219GCN1 general control of amino-acid synthesis 1-like 1 (yeast)Affinity Capture-MSBioGRID17353931 
GEMIN4DKFZp434B131 | DKFZp434D174 | HC56 | HCAP1 | HHRF-1 | p97gem (nuclear organelle) associated protein 4Affinity Capture-MSBioGRID17353931 
HEATR2FLJ20397 | FLJ25564 | FLJ31671 | FLJ39381HEAT repeat containing 2Affinity Capture-MSBioGRID17353931 
IPO4FLJ23338 | Imp4 | MGC131665importin 4Affinity Capture-MSBioGRID17353931 
MARSFLJ35667 | METRS | MTRNSmethionyl-tRNA synthetaseAffinity Capture-MSBioGRID17353931 
MYO1Bmyr1myosin IBAffinity Capture-MSBioGRID17353931 
NOC2LDKFZp564C186 | FLJ35172 | NIRnucleolar complex associated 2 homolog (S. cerevisiae)Affinity Capture-MSBioGRID17353931 
NUP93KIAA0095 | MGC21106nucleoporin 93kDaAffinity Capture-MSBioGRID17353931 
OTUD4DKFZp434I0721 | DUBA6 | HIN1 | HSHIN1 | KIAA1046OTU domain containing 4Affinity Capture-MSBioGRID17353931 
PTPLAD1B-IND1 | FLJ90376 | HSPC121protein tyrosine phosphatase-like A domain containing 1Affinity Capture-MSBioGRID17353931 
RBL2FLJ26459 | P130 | Rb2retinoblastoma-like 2 (p130)-HPRD,BioGRID10330166 
RNF219C13orf7 | DKFZp686A01276 | DKFZp686N15250 | DKFZp686O03173 | FLJ13449 | FLJ25774ring finger protein 219Affinity Capture-MSBioGRID17353931 
SF3B1PRP10 | PRPF10 | SAP155 | SF3b155splicing factor 3b, subunit 1, 155kDaAffinity Capture-MSBioGRID17353931 
SLC3A24F2 | 4F2HC | 4T2HC | CD98 | CD98HC | MDU1 | NACAEsolute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2Affinity Capture-MSBioGRID17353931 
SMAP1FLJ13159 | FLJ42245 | SMAP-1small ArfGAP 1Affinity Capture-MSBioGRID17353931 
SMPD4FLJ20297 | FLJ20756 | KIAA1418 | NSMASE3 | nSMase-3sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)Affinity Capture-MSBioGRID17353931 
SNAPC4FLJ13451 | PTFalpha | SNAP190small nuclear RNA activating complex, polypeptide 4, 190kDa-HPRD12621023 
TBPGTF2D | GTF2D1 | MGC117320 | MGC126054 | MGC126055 | SCA17 | TFIIDTATA box binding protein-HPRD,BioGRID11564744 
TMEM331600019D15Rik | FLJ10525 | SHINC3transmembrane protein 33Affinity Capture-MSBioGRID17353931 
TNPO3IPO12 | MTR10A | TRN-SR | TRN-SR2 | TRNSRtransportin 3Affinity Capture-MSBioGRID17353931 
XPO4FLJ13046 | KIAA1721exportin 4Affinity Capture-MSBioGRID17353931 
XPO6EXP6 | FLJ22519 | KIAA0370 | RANBP20exportin 6Affinity Capture-MSBioGRID17353931 
XPO7KIAA0745 | RANBP16exportin 7Affinity Capture-MSBioGRID17353931 
 
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-3815835891Ahsa-miR-381UAUACAAGGGCAAGCUCUCUGU
miR-409-3p574580m8hsa-miR-409-3pCGAAUGUUGCUCGGUGAACCCCU
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


Copyright © Bioinformatics and Systems Medicine Laboratory All Rights Reserved since 2009.