Gene Page: LRRC59

Summary
GeneID  55379
Symbol  LRRC59
Synonyms  FLJ21675|PRO1855
Description  leucine rich repeat containing 59
See related  HGNC:28817|Ensembl:ENSG00000108829|HPRD:15181|
Locus tag  -
Gene type  protein-coding
Map location  17q21.33
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
NetworkShortest path distance of core genes in the Human protein-protein interaction networkContribution to shortest path in PPI network: 0.0044 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
RNF1150.750.76
SYAP10.730.71
WBP40.710.70
CLCC10.710.71
WHAMM0.710.72
KRIT10.710.70
PPM1K0.710.72
MPHOSPH80.710.71
IFNAR10.700.68
IFT800.700.69
Top 10 negatively co-expressed genes
AF347015.21-0.52-0.37
AF347015.31-0.51-0.40
AF347015.2-0.50-0.35
AF347015.8-0.49-0.36
MT-CO2-0.49-0.37
MT-CYB-0.48-0.36
AF347015.15-0.47-0.35
AF347015.27-0.46-0.36
MT-ATP8-0.45-0.34
AF347015.18-0.43-0.29
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005515protein bindingIPI17353931 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005792microsomeIEA-
GO:0005789endoplasmic reticulum membraneIEA-
GO:0005783endoplasmic reticulumIEA-
GO:0016020membraneIEA-
GO:0016021integral to membraneIEA-
 
InteractionsShown by Network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
MPGAAG | APNG | CRA36.1 | MDG | Mid1 | PIG11 | PIG16 | anpgN-methylpurine-DNA glycosylaseAffinity Capture-MSBioGRID17353931 
TNFRSF1ACD120a | FPF | MGC19588 | TBP1 | TNF-R | TNF-R-I | TNF-R55 | TNFAR | TNFR1 | TNFR55 | TNFR60 | p55 | p55-R | p60tumor necrosis factor receptor superfamily, member 1A-HPRD14743216 
 
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-142-3p149214981Ahsa-miR-142-3pUGUAGUGUUUCCUACUUUAUGGA
hsa-miR-142-3pUGUAGUGUUUCCUACUUUAUGGA
miR-1558989051A,m8hsa-miR-155UUAAUGCUAAUCGUGAUAGGGG
miR-204/211110911151Ahsa-miR-204brainUUCCCUUUGUCAUCCUAUGCCU
hsa-miR-211UUCCCUUUGUCAUCCUUCGCCU
miR-33863691Ahsa-miR-338brainUCCAGCAUCAGUGAUUUUGUUGA
miR-542-3p340346m8hsa-miR-542-3pUGUGACAGAUUGAUAACUGAAA
miR-715091515m8hsa-miR-7SZUGGAAGACUAGUGAUUUUGUUG
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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